Complete nucleotide sequence and genome organization of an endornavirus from bottle gourd (Lagenaria siceraria) in California, U.S.A

Virus Genes. 2014 Aug;49(1):163-8. doi: 10.1007/s11262-014-1064-x. Epub 2014 May 13.

Abstract

The full-length nucleotide sequence and genome organization of an Endornavirus isolated from ornamental hard shell bottle gourd plants (Lagenaria siceraria (Molina) Standl.) in California (CA), USA tentatively named L. siceraria endornavirus-California (LsEV-CA) was determined. The LsEV-CA genome was 15088 bp in length, with a G + C content of 36.55 %. The lengths of the 5' and 3' untranslated regions were 111 and 52 bp, respectively. The genome of LsEV-CA contained one large ORF encoding a 576 kDa polyprotein. The predicted protein contains two glycosyltransferase motifs, as well as RNA-dependent RNA polymerase and helicase domains. LsEV-CA was detected in healthy-looking field-grown gourd plants, as well as plants expressing yellows symptoms. It was also detected in non-symptomatic greenhouse-grown gourd seedlings grown from seed obtained from the same field sites. These preliminary data indicate that LsEV-CA is likely not associated with the gourd-yellows syndrome observed in the field.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions
  • 5' Untranslated Regions
  • Base Composition
  • California
  • Cucurbitaceae / virology*
  • Gene Order
  • Genome, Viral*
  • Molecular Sequence Data
  • Molecular Weight
  • Open Reading Frames
  • Plant Viruses / genetics
  • Plant Viruses / isolation & purification
  • Polyproteins / chemistry
  • Polyproteins / genetics
  • RNA Viruses / genetics*
  • RNA Viruses / isolation & purification
  • RNA, Viral / genetics*
  • Sequence Analysis, DNA*

Substances

  • 3' Untranslated Regions
  • 5' Untranslated Regions
  • Polyproteins
  • RNA, Viral

Associated data

  • GENBANK/KF562072
  • RefSeq/NC_023641