Wickerhamiella siamensis f.a., sp. nov., an endophytic and epiphytic yeast species isolated from sugar cane leaf

Int J Syst Evol Microbiol. 2014 Nov;64(Pt 11):3849-3855. doi: 10.1099/ijs.0.067702-0. Epub 2014 Aug 28.

Abstract

Six strains representing a novel yeast species were isolated from tissue (DMKU-SE106(T), DMKU-SE110, DMKU-SE112 and DMKU-SE132) and the external surface (DMKU-SP335 and DMKU-SP406) of sugar cane leaves collected in Thailand. On the basis of morphological, biochemical, physiological and chemotaxonomic characteristics, and sequence analysis of the D1/D2 region of the LSU rRNA gene and the internal transcribed spacer (ITS) region, the six strains were found to represent a single novel species of the genus Wickerhamiella although the formation of ascospores was not observed. The sequences of the D1/D2 region of the LSU rRNA gene and ITS region of the six strains differed from each other by 0-2 and 2-3 nt substitutions, respectively. The novel species was related most closely to Candida infanticola but with 4.5-4.6% nucleotide substitutions in the D1/D2 region of the LSU rRNA gene and 6.6-7.1% nucleotide substitutions in the ITS region. The name Wickerhamiella siamensis f.a., sp. nov. is proposed. The type strain is DMKU-SE106(T) ( =BCC 61185(T) =NBRC 109697(T) =CBS 13331(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA, Fungal / genetics
  • DNA, Ribosomal Spacer / genetics
  • Endophytes / classification
  • Endophytes / genetics
  • Endophytes / isolation & purification
  • Genes, rRNA
  • Molecular Sequence Data
  • Mycological Typing Techniques
  • Phylogeny*
  • Plant Leaves / microbiology*
  • Saccharomycetales / classification*
  • Saccharomycetales / genetics
  • Saccharomycetales / isolation & purification
  • Saccharum / microbiology*
  • Sequence Analysis, DNA
  • Thailand

Substances

  • DNA, Fungal
  • DNA, Ribosomal Spacer

Associated data

  • GENBANK/AB915236
  • GENBANK/AB915237
  • GENBANK/AB915238
  • GENBANK/AB915239
  • GENBANK/AB915240
  • GENBANK/AB915241
  • GENBANK/AB915242
  • GENBANK/AB915243
  • GENBANK/AB924020
  • GENBANK/AB924021
  • GENBANK/AB924024
  • GENBANK/AB924025