Phosphorylation of Krüppel-like factor 3 (KLF3/BKLF) and C-terminal binding protein 2 (CtBP2) by homeodomain-interacting protein kinase 2 (HIPK2) modulates KLF3 DNA binding and activity

J Biol Chem. 2015 Mar 27;290(13):8591-605. doi: 10.1074/jbc.M115.638338. Epub 2015 Feb 6.

Abstract

Krüppel-like factor 3 (KLF3/BKLF), a member of the Krüppel-like factor (KLF) family of transcription factors, is a widely expressed transcriptional repressor with diverse biological roles. Although there is considerable understanding of the molecular mechanisms that allow KLF3 to silence the activity of its target genes, less is known about the signal transduction pathways and post-translational modifications that modulate KLF3 activity in response to physiological stimuli. We observed that KLF3 is modified in a range of different tissues and found that the serine/threonine kinase homeodomain-interacting protein kinase 2 (HIPK2) can both bind and phosphorylate KLF3. Mass spectrometry identified serine 249 as the primary phosphorylation site. Mutation of this site reduces the ability of KLF3 to bind DNA and repress transcription. Furthermore, we also determined that HIPK2 can phosphorylate the KLF3 co-repressor C-terminal binding protein 2 (CtBP2) at serine 428. Finally, we found that phosphorylation of KLF3 and CtBP2 by HIPK2 strengthens the interaction between these two factors and increases transcriptional repression by KLF3. Taken together, our results indicate that HIPK2 potentiates the activity of KLF3.

Keywords: C-terminal Binding Protein (CtBP2); Gene Expression; Homeodomain-interacting Protein Kinase 2 (HIPK2); Kruppel-like Factor (KLF); Kruppel-like Factor 3 (KLF3/BKLF); Post-translational Modification (PTM); Protein Phosphorylation; Transcription Regulation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alcohol Oxidoreductases
  • Amino Acid Sequence
  • Animals
  • COS Cells
  • Carrier Proteins / physiology*
  • Chlorocebus aethiops
  • Co-Repressor Proteins
  • DNA / chemistry
  • DNA-Binding Proteins / metabolism*
  • Electrophoretic Mobility Shift Assay
  • Kruppel-Like Transcription Factors / chemistry
  • Kruppel-Like Transcription Factors / metabolism*
  • Mice
  • Molecular Sequence Data
  • NIH 3T3 Cells
  • Phosphoproteins / metabolism*
  • Phosphorylation
  • Protein Binding
  • Protein Processing, Post-Translational
  • Protein Serine-Threonine Kinases / physiology*
  • Transcription, Genetic
  • Transcriptional Activation

Substances

  • Carrier Proteins
  • Co-Repressor Proteins
  • DNA-Binding Proteins
  • Klf3 protein, mouse
  • Kruppel-Like Transcription Factors
  • Phosphoproteins
  • DNA
  • Alcohol Oxidoreductases
  • Ctbp2 protein, mouse
  • Hipk2 protein, mouse
  • Protein Serine-Threonine Kinases