A novel mycovirus identified from the rice false smut fungus Ustilaginoidea virens

Virus Genes. 2015 Aug;51(1):159-62. doi: 10.1007/s11262-015-1212-y. Epub 2015 Jun 4.

Abstract

The complete sequence of a novel mycovirus infecting Ustilaginoidea virens, the causal agent of false smut of rice, is reported here and designated as Ustilaginoidea virens unassigned RNA virus HNND-1 (UvURV-HNND-1). This virus has an undivided dsRNA genome of 2903 nt in length and contains two non-overlapping open reading frames (ORF1 and 2), with the small ORF1 encoding a protein of unknown function that showed sequence similarity to the comparable protein in virus Alternaria longipes dsRNA virus 1(AlRV1) and a larger ORF2 encoded the protein showing identities to the RNA-dependent RNA polymerases of AlRV1 and some other unassigned dsRNA viruses. Phylogenetic analysis showed that UvURV-HNND-1 is more closely related to unclassified viruses such as AlRV1 and distinct from distantly related members of the family Partitiviridae. Here, we propose in accordance with previous reports that UvURV-HNND-1 might belong to a new mycovirus genus together with AlRV1 and other similar viruses.

MeSH terms

  • Cluster Analysis
  • Fungal Viruses / classification*
  • Fungal Viruses / isolation & purification*
  • Genome, Viral*
  • Hypocreales / isolation & purification
  • Hypocreales / virology*
  • Molecular Sequence Data
  • Open Reading Frames
  • Oryza / microbiology
  • Phylogeny
  • Plant Diseases / microbiology
  • RNA Viruses / genetics*
  • RNA Viruses / isolation & purification*
  • RNA, Double-Stranded / genetics
  • RNA, Viral / genetics*
  • RNA-Dependent RNA Polymerase / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid

Substances

  • RNA, Double-Stranded
  • RNA, Viral
  • RNA-Dependent RNA Polymerase

Associated data

  • GENBANK/KR106133