Real-Time Label-Free Direct Electronic Monitoring of Topoisomerase Enzyme Binding Kinetics on Graphene

ACS Nano. 2015 Nov 24;9(11):11166-76. doi: 10.1021/acsnano.5b05709. Epub 2015 Oct 12.

Abstract

Monolayer graphene field-effect sensors operating in liquid have been widely deployed for detecting a range of analyte species often under equilibrium conditions. Here we report on the real-time detection of the binding kinetics of the essential human enzyme, topoisomerase I interacting with substrate molecules (DNA probes) that are immobilized electrochemically on to monolayer graphene strips. By monitoring the field-effect characteristics of the graphene biosensor in real-time during the enzyme-substrate interactions, we are able to decipher the surface binding constant for the cleavage reaction step of topoisomerase I activity in a label-free manner. Moreover, an appropriate design of the capture probes allows us to distinctly follow the cleavage step of topoisomerase I functioning in real-time down to picomolar concentrations. The presented results are promising for future rapid screening of drugs that are being evaluated for regulating enzyme activity.

Keywords: biosensor; enzyme activity; field effect; human topoisomerase; label-free biosensing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Biocatalysis
  • Computer Systems*
  • DNA Topoisomerases, Type I / metabolism*
  • Electronics / methods*
  • Graphite / chemistry*
  • Humans
  • Kinetics
  • Molecular Sequence Data
  • Protein Binding
  • Staining and Labeling*

Substances

  • Graphite
  • DNA Topoisomerases, Type I
  • TOP1 protein, human