Assembly of colicin genes from a few DNA fragments. Nucleotide sequence of colicin D

Mol Microbiol. 1989 Jul;3(7):891-902. doi: 10.1111/j.1365-2958.1989.tb00238.x.

Abstract

The nucleotide sequence of a 2.4 kb Dral-EcoRV fragment of pColD-CA23 DNA was determined. The segment of DNA contained the colicin D structural gene (cda) and the colicin D immunity gene (cdi). From the nucleotide sequence it was deduced that colicin D had a molecular weight of 74,683 D and that the immunity protein had a molecular weight of 10,057 D. The amino-terminal portion of colicin D was found to be 96% homologous with the same region of colicin B. Both colicins share the same cell-surface receptor, FepA, and require the TonB protein for uptake. A putative TonB box pentapeptide sequence was identified in the amino terminus of the colicin D protein sequence. Since colicin D inhibits protein synthesis, it was unexpected that no homology was found between the carboxy-terminal part of this colicin and that of the protein synthesis inhibiting colicin E3 and cloacin DF13. This could indicate that colicin D does not function in the same manner as the latter two bacteriocins. The observed homology with colicin B supports the domain structure concept of colicin organization. The structural organization of the colicin operon is discussed. The extensive amino-terminal homology between colicins D and B, and the strong carboxy-terminal homology between colicins B, A, and N suggest an evolutionary assembly of colicin genes from a few DNA fragments which encode the functional domains responsible for colicin activity and uptake.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acids / analysis
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Base Sequence
  • Colicins / antagonists & inhibitors
  • Colicins / genetics*
  • Colicins / metabolism
  • DNA, Bacterial / genetics
  • Escherichia coli / genetics
  • Escherichia coli Proteins*
  • Gene Expression Regulation, Bacterial
  • Genes, Bacterial*
  • Molecular Sequence Data
  • Molecular Weight
  • Restriction Mapping
  • Sequence Homology, Nucleic Acid

Substances

  • Amino Acids
  • Bacterial Proteins
  • Cbi protein, E coli
  • Colicins
  • DNA, Bacterial
  • Escherichia coli Proteins
  • ceiC protein, E coli
  • colicin immunity proteins

Associated data

  • GENBANK/X14941