Sequence determination of a new parrot bornavirus-5 strain in Japan: implications of clade-specific sequence diversity in the regions interacting with host factors

Microbiol Immunol. 2016 Jun;60(6):437-41. doi: 10.1111/1348-0421.12385.

Abstract

In this study, the genome sequence of a new parrot bornavirus-5 (PaBV-5) detected in Eclectus roratus was determined. Phylogenetic analysis showed that the genus Bornavirus is divided into three major clades and that PaBV-5 belongs to clade 2, which contains avian viruses that exhibit infectivity to mammalian cells. Sequence comparisons of the regions known to interact with host factors indicated that the clade 2 avian viruses possess sequences intermediate between the clade 1 mammalian viruses and the clade 3 avian viruses, suggesting that the identified regions might contribute to the differences in virological properties between the three clades.

Keywords: Avian bornavirus; host factors; phylogenetic analysis.

MeSH terms

  • Animals
  • Base Sequence
  • Bird Diseases / virology
  • Bornaviridae / chemistry
  • Bornaviridae / classification
  • Bornaviridae / genetics*
  • Genome, Viral
  • Japan
  • Parrots / virology*
  • Phylogeny
  • RNA, Viral / genetics
  • Sequence Analysis
  • Sequence Analysis, DNA

Substances

  • RNA, Viral