The democratization of gene editing: Insights from site-specific cleavage and double-strand break repair

DNA Repair (Amst). 2016 Aug:44:6-16. doi: 10.1016/j.dnarep.2016.05.001. Epub 2016 May 12.

Abstract

DNA double-strand breaks (DSBs) are dangerous lesions that if not properly repaired can lead to genomic change or cell death. Organisms have developed several pathways and have many factors devoted to repairing DSBs, which broadly occurs by homologous recombination, which relies on an identical or homologous sequence to template repair, or nonhomologous end-joining. Much of our understanding of these repair mechanisms has come from the study of induced DNA cleavage by site-specific endonucleases. In addition to their biological role, these cellular pathways can be co-opted for gene editing to study gene function or for gene therapy or other applications. While the first gene editing experiments were done more than 20 years ago, the recent discovery of RNA-guided endonucleases has simplified approaches developed over the years to make gene editing an approach that is available to the entire biomedical research community. Here, we review DSB repair mechanisms and site-specific cleavage systems that have provided insight into these mechanisms and led to the current gene editing revolution.

Keywords: CRISPR-Cas9; Double-strand break repair; Gene editing; HO endonuclease; Homologous recombination; Homology-directed repair; I-SceI endonuclease; Nonhomologous end-joining.

Publication types

  • Review

MeSH terms

  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • CRISPR-Associated Protein 9
  • CRISPR-Cas Systems*
  • Clustered Regularly Interspaced Short Palindromic Repeats
  • DNA / genetics*
  • DNA / metabolism
  • DNA Breaks, Double-Stranded
  • DNA End-Joining Repair*
  • DNA Mismatch Repair*
  • Deoxyribonucleases, Type II Site-Specific / genetics
  • Deoxyribonucleases, Type II Site-Specific / metabolism
  • Endodeoxyribonucleases / genetics
  • Endodeoxyribonucleases / metabolism
  • Endonucleases / genetics
  • Endonucleases / metabolism
  • Gene Editing / methods*
  • Humans
  • RNA-Directed DNA Polymerase / genetics
  • RNA-Directed DNA Polymerase / metabolism
  • Recombinational DNA Repair*
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism
  • Transcription Activator-Like Effector Nucleases / genetics
  • Transcription Activator-Like Effector Nucleases / metabolism
  • Zinc Fingers / genetics

Substances

  • Bacterial Proteins
  • Saccharomyces cerevisiae Proteins
  • DNA
  • RNA-Directed DNA Polymerase
  • maturase I-AniI
  • CRISPR-Associated Protein 9
  • Cas9 protein, Francisella novicida
  • Endodeoxyribonucleases
  • Endonucleases
  • I-Ppo endonuclease
  • Transcription Activator-Like Effector Nucleases
  • SCEI protein, S cerevisiae
  • Deoxyribonucleases, Type II Site-Specific