PKR activation and eIF2α phosphorylation mediate human globin mRNA splicing at spliceosome assembly

Cell Res. 2017 May;27(5):688-704. doi: 10.1038/cr.2017.39. Epub 2017 Apr 4.

Abstract

Short elements in mammalian mRNA can control gene expression by activating the RNA-dependent protein kinase PKR that attenuates translation by phosphorylating cytoplasmic eukaryotic initiation factor 2α (eIF2α). We demonstrate a novel, positive role for PKR activation and eIF2α phosphorylation in human globin mRNA splicing. PKR localizes in splicing complexes and associates with splicing factor SC35. Splicing and early-stage spliceosome assembly on β-globin pre-mRNA depend strictly on activation of PKR by a codon-containing RNA fragment within exon 1 and on phosphorylation of nuclear eIF2α on Serine 51. Nonphosphorylatable mutant eIF2αS51A blocked β-globin mRNA splicing in cells and nuclear extract. Mutations of the β-globin RNA activator abrogated PKR activation and profoundly affected mRNA splicing efficiency. PKR depletion abrogated splicing and spliceosome assembly; recombinant PKR effectively restored splicing. Excision of the first intron of β-globin induces strand displacement within the RNA activator of PKR by a sequence from exon 2, a structural rearrangement that silences the ability of spliced β-globin mRNA to activate PKR. Thus, the ability to activate PKR is transient, serving solely to enable splicing. α-Globin pre-mRNA splicing is controlled likewise but positions of PKR activator and silencer are reversed, demonstrating evolutionary flexibility in how PKR activation regulates globin mRNA splicing through eIF2α phosphorylation.

MeSH terms

  • Base Sequence
  • Enzyme Activation
  • Eukaryotic Initiation Factor-2 / metabolism*
  • Exons / genetics
  • Globins / genetics*
  • Globins / metabolism
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • Introns / genetics
  • Models, Biological
  • Phosphorylation
  • Protein Kinase Inhibitors / pharmacology
  • RNA Splicing / genetics*
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Recombinant Proteins / pharmacology
  • Spliceosomes / metabolism*
  • eIF-2 Kinase / metabolism*

Substances

  • Eukaryotic Initiation Factor-2
  • Protein Kinase Inhibitors
  • RNA, Messenger
  • Recombinant Proteins
  • Globins
  • eIF-2 Kinase