Structural Analysis Reveals Features of Ribosome Assembly Factor Nsa1/WDR74 Important for Localization and Interaction with Rix7/NVL2

Structure. 2017 May 2;25(5):762-772.e4. doi: 10.1016/j.str.2017.03.008. Epub 2017 Apr 13.

Abstract

Ribosome assembly is a complex process that requires hundreds of essential assembly factors, including Rix7 (NVL2 in mammals) and Nsa1 (WDR74 in mammals). Rix7 is a type II double ring, AAA-ATPase, which is closely related to the well-known Cdc48/p97. Previous studies in Saccharomyces cerevisiae suggest that Rix7 mediates the release of Nsa1 from nucleolar pre-60S particles; however, the underlying mechanisms of this release are unknown. Through multiple structural analyses we show that S. cerevisiae Nsa1 is composed of an N-terminal seven-bladed WD40 domain followed by a lysine-rich C terminus that extends away from the WD40 domain and is required for nucleolar localization. Co-immunoprecipitation assays with the mammalian homologs identified a well-conserved interface within WDR74 that is important for its association with NVL2. We further show that WDR74 associates with the D1 AAA domain of NVL2, which represents a novel mode of binding of a substrate with a type II AAA-ATPase.

Keywords: AAA-ATPase; WD40 domain; pre-rRNA processing; ribosome assembly.

MeSH terms

  • ATPases Associated with Diverse Cellular Activities / chemistry*
  • ATPases Associated with Diverse Cellular Activities / metabolism
  • Adenosine Triphosphatases / chemistry*
  • Adenosine Triphosphatases / metabolism
  • Amino Acid Motifs
  • Animals
  • Carrier Proteins / chemistry*
  • Carrier Proteins / metabolism
  • Conserved Sequence
  • Humans
  • Nuclear Proteins / chemistry*
  • Nuclear Proteins / metabolism
  • Protein Binding
  • Protein Domains
  • Protein Transport
  • RNA-Binding Proteins
  • Ribosomal Proteins / chemistry*
  • Ribosomal Proteins / metabolism
  • Saccharomyces cerevisiae Proteins / chemistry*
  • Saccharomyces cerevisiae Proteins / metabolism

Substances

  • Carrier Proteins
  • Nsa1 protein, S cerevisiae
  • Nuclear Proteins
  • RNA-Binding Proteins
  • Ribosomal Proteins
  • Saccharomyces cerevisiae Proteins
  • WDR74 protein, human
  • Adenosine Triphosphatases
  • RIX7 protein, S cerevisiae
  • ATPases Associated with Diverse Cellular Activities
  • NVL protein, human