Association Analysis of Nonsyndromic Congenital Heart Disease and Tag Single Nucleotide Polymorphisms of TBX20 and Genes in the Ras-MAPK Pathway

Genet Test Mol Biomarkers. 2017 Jul;21(7):440-444. doi: 10.1089/gtmb.2016.0369. Epub 2017 May 19.

Abstract

Aims: The present study was performed to determine whether there are variants in TBX20 and genes of the Ras-MAPK pathway associated with nonsyndromic congenital heart disease (ns-CHD).

Materials and methods: A total of 223 ns-CHD patients and 273 healthy controls from China were selected as study subjects to perform an association analysis using 22 tag single-nucleotide polymorphisms (tag SNPs) located either in one of three genes in the Ras-MAPK pathway (MAP2K2, BRAF, and RAF1) or the TBX20 gene that have previously been associated with syndromic congenital heart disease.

Results: The results showed that none of these tag SNPs are associated with ns-CHD.

Conclusions: The results suggested that these disease-causing genes, which were previously discovered in familial cases, might not be the major genetic factors causing the development of ns-CHD in Chinese.

Keywords: Ras-MAPK pathway; TBX20; association analysis; congenital heart disease; tag SNP.

MeSH terms

  • Adult
  • Asian People / genetics
  • Case-Control Studies
  • China
  • Female
  • Genetic Predisposition to Disease
  • Haplotypes
  • Heart Defects, Congenital / genetics*
  • Humans
  • MAP Kinase Kinase 2 / genetics
  • Male
  • Polymorphism, Single Nucleotide / genetics
  • Proto-Oncogene Proteins B-raf / genetics
  • Proto-Oncogene Proteins c-raf / genetics
  • T-Box Domain Proteins / genetics
  • T-Box Domain Proteins / metabolism

Substances

  • T-Box Domain Proteins
  • TBX20 protein, human
  • MAP2K2 protein, human
  • BRAF protein, human
  • Proto-Oncogene Proteins B-raf
  • Proto-Oncogene Proteins c-raf
  • MAP Kinase Kinase 2