Bioinformatic analysis of PFN2 dysregulation and its prognostic value in head and neck squamous carcinoma

Future Oncol. 2018 Feb;14(5):449-459. doi: 10.2217/fon-2017-0348. Epub 2018 Jan 11.

Abstract

Aim: This study aimed to identify PFN2 expression profile, its prognostic value and the mechanism of its dysregulation in head and neck squamous cell carcinoma (HNSC).

Materials & methods: Bioinformatic analysis was performed using data in the Gene Expression Omnibus Datasets, Human Protein Atlas and The Cancer Genome Atlas-HNSC.

Results: PFN2 was upregulated in HNSC than in normal head and neck tissues. High PFN2 expression independently predicted poor overall survival in primary HNSC (hazard ratio: 1.548, 95% CI: 1.174-2.042; p = 0.002). Fourteen percent of HNSC cases had PFN2 amplification. PFN2 DNA methylation was negatively correlated with its mRNA expression (Pearson's r = -0.713).

Conclusion: High PFN2 expression might serve as a valuable predictor for poor overall survival of HNSC. DNA amplification and hypomethylation might be two mechanisms of PFN2 dysregulation.

Keywords: HNSC; PFN2; amplification; methylation; survival.

MeSH terms

  • Aged
  • Carcinoma, Squamous Cell / genetics*
  • Carcinoma, Squamous Cell / metabolism
  • Carcinoma, Squamous Cell / mortality*
  • Carcinoma, Squamous Cell / pathology
  • Computational Biology* / methods
  • DNA Methylation
  • Databases, Genetic
  • Female
  • Gene Amplification
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic*
  • Head and Neck Neoplasms / genetics*
  • Head and Neck Neoplasms / metabolism
  • Head and Neck Neoplasms / mortality*
  • Head and Neck Neoplasms / pathology
  • Humans
  • Immunohistochemistry
  • Male
  • Middle Aged
  • Neoplasm Metastasis
  • Neoplasm Staging
  • Profilins / genetics*
  • Profilins / metabolism
  • Prognosis
  • Squamous Cell Carcinoma of Head and Neck
  • Survival Analysis

Substances

  • PFN2 protein, human
  • Profilins