Ultrasound has been regarded as an environmental friendly technology to utilize microalgae biomass and control algal blooms. In this study, four quantitative techniques, including cell counting, optical density of algal suspension, pigments release, and protein release, were performed on three species of microalgae ( M. aeruginosa, C. pyrenoidosa, and C. reinhardtii) to develop effective techniques for rapid monitoring of cell disruption and to optimize the acoustic energy efficiency. Results showed optical density of algal suspensions was not an optimal indicator to monitor cell disruption, although it is a common technique for determining cell concentration in microbial cultures. Instead, an accurate and reliable technique was to determine the release of intracellular pigments (absorbance peaks of supernatant) for indicating cell rupture. The protein released during sonication could also be a useful indicator if it is the component of interest. A fitted power functional model showed a strong relationship between cell disruption and energy consumption ( R2 > 0.87). This model could provide an effective approach to directly compare the energy efficiency of ultrasound in different systems or with varying microalgae species. This study provides valuable information for microalgae utilization and the treatment of algal blooms by ultrasound, so as to achieve energy conservation and environmental safety.