RNA-Seq analysis reveals a negative role of MSMO1 with a synergized NSDHL expression during adipogenesis of 3T3-L1

Biosci Biotechnol Biochem. 2019 Apr;83(4):641-652. doi: 10.1080/09168451.2018.1559719. Epub 2018 Dec 22.

Abstract

To investigate a comprehensive transcriptome information of adipogenesis, we assessed global changes in the transcriptional events during 3T3-L1 adipogenesis by RNA-Seq. Compared to the preadipocyte stage (day 0), gene expression profiling demonstrated that 2013 genes were up-regulated, and 2430 genes were down-regulated at the differentiated adipocyte stage (day 13). Among these differentially expressed genes, we found the expression of MSMO1 was down-regulated at day 13, but whether it impacts adipogenesis has not been characterized. Thus, we investigated its role in adipogenesis. Results showed that overexpression of MSMO1 inhibited the differentiation of 3T3-L1, and led to the down-regulated expression of adipogenic marker genes, while knockdown of MSMO1 had totally opposite effects. Furthermore, interaction network model allowed us to validate an unexpected role between MSMO1 and its partner, NSDHL, in regulating adipogenesis, which plays a synergized expression pattern with MSMO1. Our findings indicate that MSMO1 and NSDHL are novel modulators of adipogenesis.

Keywords: RNA-Seq; adipogenesis; differentially expressed genes.

MeSH terms

  • 3-Hydroxysteroid Dehydrogenases / genetics*
  • 3-Hydroxysteroid Dehydrogenases / metabolism
  • 3T3-L1 Cells
  • Adipocytes / cytology
  • Adipocytes / metabolism*
  • Adipogenesis / genetics*
  • Animals
  • Cell Differentiation
  • Gene Expression Profiling
  • Gene Expression Regulation
  • Gene Ontology
  • Gene Regulatory Networks
  • Genome-Wide Association Study
  • Mice
  • Mixed Function Oxygenases / genetics*
  • Mixed Function Oxygenases / metabolism
  • Molecular Sequence Annotation
  • Protein Interaction Mapping
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism
  • Sequence Analysis, RNA
  • Transcriptome*

Substances

  • RNA, Messenger
  • Mixed Function Oxygenases
  • 3-Hydroxysteroid Dehydrogenases
  • Nsdhl protein, mouse
  • methylsterol monooxygenase