LINC00162 confers sensitivity to 5-Aza-2'-deoxycytidine via modulation of an RNA splicing protein, HNRNPH1

Oncogene. 2019 Jun;38(26):5281-5293. doi: 10.1038/s41388-019-0792-8. Epub 2019 Mar 26.

Abstract

DNA demethylation therapy is now expanding from hematological tumors to solid tumors. To exploit its maximum efficacy, long-term treatment is needed, and stratification of sensitive patients is critically important. Here, we identified a long non-coding RNA, LINC00162, as highly and frequently expressed in gastric cancer cell lines sensitive to 5-aza-2'-deoxycytidine (5-aza-dC). Knockdown of LINC00162 decreased the sensitivity while its overexpression increased the sensitivity. In vivo experiments also showed that LINC00162 overexpression increased the sensitivity. LINC00162 enhanced cell cycle arrest and apoptosis induced by 5-aza-dC, but did not affect its DNA demethylation effect. Mechanistically, LINC00162 interacted with an RNA splicing protein, HNRNPH1, and decreased splicing of an anti-apoptotic splicing variant, BCL-XL. LINC00162 may have translational value to predict patients who will respond to 5-aza-dC.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antimetabolites, Antineoplastic / therapeutic use
  • Biomarkers, Tumor / genetics
  • Cell Line, Tumor
  • Decitabine / therapeutic use*
  • Drug Resistance, Neoplasm / genetics*
  • Female
  • Gene Expression Regulation, Neoplastic / drug effects
  • Heterogeneous-Nuclear Ribonucleoprotein Group F-H / genetics*
  • Humans
  • Mice
  • Mice, Inbred BALB C
  • Mice, Nude
  • RNA Splicing / drug effects
  • RNA Splicing / genetics
  • RNA, Long Noncoding / genetics
  • RNA, Long Noncoding / physiology*
  • Stomach Neoplasms / genetics
  • Stomach Neoplasms / metabolism
  • Stomach Neoplasms / pathology
  • Xenograft Model Antitumor Assays
  • bcl-X Protein / genetics
  • bcl-X Protein / metabolism

Substances

  • Antimetabolites, Antineoplastic
  • Biomarkers, Tumor
  • Heterogeneous-Nuclear Ribonucleoprotein Group F-H
  • RNA, Long Noncoding
  • bcl-X Protein
  • Decitabine