TSC2/PKD1 contiguous gene syndrome, with emphasis on a case with an atypical mild polycystic kidney phenotype and a novel genetic variant

Nefrologia (Engl Ed). 2020 Jan-Feb;40(1):91-98. doi: 10.1016/j.nefro.2019.03.003. Epub 2019 Jun 5.
[Article in English, Spanish]

Abstract

About 80% of patients with tuberous sclerosis complex (TSC) present renal involvement, usually as angiomyolipomas followed by cystic disease. An early diagnosis of polycystic kidney disease (PKD) in such patients is frequently related to the TSC2/PKD1 contiguous gene syndrome (PKDTS). Molecular confirmation of PKDTS is important for a prompt diagnosis, which can be complicated by the phenotypic heterogeneity of PKD and the absence of a clear phenotype-genotype correlation. Herein, we report three PKDTS pediatric patients. The case 3 did not present a classic PKDTS phenotype, having only one observable cyst on renal ultrasound at age 4 and multiple small cysts on magnetic resonance imaging at age 15. In this patient, chromosomal microarray analysis showed a gross deletion of 230.8kb that involved TSC2, PKD1 and 13 other protein-coding genes, plus a heterozygous duplication of a previously undescribed copy number variant of 242.9kb that involved six protein-coding genes, including SSTR5, in the 16p13.3 region. Given the observations that the case 3 presented the mildest renal phenotype, harbored three copies of SSTR5, and the reported inhibition of cystogenesis (specially in liver) observed with somatostatin analogs in some patients with autosomal dominant PKD, it can be hypothesized that other genetic factors as the gene dosage of SSTR5 may influence the PKD phenotype and the progression of the disease; however, future work is needed to examine this possibility.

Keywords: Complejo de esclerosis tuberosa; Copy number variant; Enfermedad del riñón poliquístico; Gen SSTR5; Polycystic kidney disease; SSTR5 gene; Síndrome de genes contiguos TSC2/PKD1; TSC2/PKD1 contiguous gene syndrome; Tuberous sclerosis complex; Variante del número de copias.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Child
  • Child, Preschool
  • Exons / genetics
  • Female
  • Gene Deletion
  • Genetic Variation*
  • Humans
  • Infant
  • Male
  • Phenotype
  • Polycystic Kidney Diseases / diagnostic imaging
  • Polycystic Kidney Diseases / genetics*
  • Syndrome
  • TRPP Cation Channels / genetics*
  • Tuberous Sclerosis / diagnostic imaging
  • Tuberous Sclerosis / genetics*
  • Tuberous Sclerosis Complex 2 Protein / genetics*

Substances

  • TRPP Cation Channels
  • TSC2 protein, human
  • Tuberous Sclerosis Complex 2 Protein
  • polycystic kidney disease 1 protein