Structural basis for ion selectivity in TMEM175 K+ channels

Elife. 2020 Apr 8:9:e53683. doi: 10.7554/eLife.53683.

Abstract

The TMEM175 family constitutes recently discovered K+channels that are important for autophagosome turnover and lysosomal pH regulation and are associated with the early onset of Parkinson Disease. TMEM175 channels lack a P-loop selectivity filter, a hallmark of all known K+ channels, raising the question how selectivity is achieved. Here, we report the X-ray structure of a closed bacterial TMEM175 channel in complex with a nanobody fusion-protein disclosing bound K+ ions. Our analysis revealed that a highly conserved layer of threonine residues in the pore conveys a basal K+ selectivity. An additional layer comprising two serines in human TMEM175 increases selectivity further and renders this channel sensitive to 4-aminopyridine and Zn2+. Our findings suggest that large hydrophobic side chains occlude the pore, forming a physical gate, and that channel opening by iris-like motions simultaneously relocates the gate and exposes the otherwise concealed selectivity filter to the pore lumen.

Keywords: E. coli; human; ion channel; macrobody; molecular biophysics; nanobody; parkinson disease; potassium channel; selectivity filter; structural biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • HEK293 Cells
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Ion Channel Gating
  • Models, Molecular
  • Potassium / chemistry
  • Potassium / metabolism
  • Potassium Channels / chemistry*
  • Potassium Channels / metabolism*
  • Protein Conformation
  • Serine / chemistry
  • Serine / metabolism
  • Threonine / chemistry
  • Threonine / metabolism

Substances

  • Potassium Channels
  • TMEM175 protein, human
  • Threonine
  • Serine
  • Potassium

Associated data

  • PDB/6HD8
  • PDB/6HD9
  • PDB/6HDA
  • PDB/6HDB
  • PDB/6HDC
  • PDB/6SWR
  • PDB/5VRE