Srsf10 and the minor spliceosome control tissue-specific and dynamic SR protein expression

Elife. 2020 Apr 27:9:e56075. doi: 10.7554/eLife.56075.

Abstract

Minor and major spliceosomes control splicing of distinct intron types and are thought to act largely independent of one another. SR proteins are essential splicing regulators mostly connected to the major spliceosome. Here, we show that Srsf10 expression is controlled through an autoregulated minor intron, tightly correlating Srsf10 with minor spliceosome abundance across different tissues and differentiation stages in mammals. Surprisingly, all other SR proteins also correlate with the minor spliceosome and Srsf10, and abolishing Srsf10 autoregulation by Crispr/Cas9-mediated deletion of the autoregulatory exon induces expression of all SR proteins in a human cell line. Our data thus reveal extensive crosstalk and a global impact of the minor spliceosome on major intron splicing.

Keywords: SR proteins; SRSF10; alternative splicing; chromosomes; gene expression; human; minor spliceosome; mouse.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • CRISPR-Cas Systems
  • Cell Cycle Proteins / genetics*
  • Cell Line
  • Gene Expression Regulation, Developmental*
  • Humans
  • Introns*
  • Mice
  • RNA Splicing
  • Repressor Proteins / genetics*
  • Serine-Arginine Splicing Factors / genetics*
  • Spliceosomes / genetics*

Substances

  • Cell Cycle Proteins
  • Repressor Proteins
  • SRSF10 protein, human
  • SRSF10 protein, mouse
  • Serine-Arginine Splicing Factors

Associated data

  • SRA/DRP003641
  • SRA/SRP017778