Pathogenic Variants of SLC22A12 (URAT1) and SLC2A9 (GLUT9) in Spanish Patients with Renal Hypouricemia: Founder Effect of SLC2A9 Variant c.374C>T; p.(T125M)

Int J Mol Sci. 2023 May 8;24(9):8455. doi: 10.3390/ijms24098455.

Abstract

Renal hypouricemia (RHUC) is a rare inherited disorder characterized by impaired urate reabsorption in the proximal tubule resulting in low urate serum levels and increased urate excretion. Some patients may present severe complications such as exercise-induced acute renal failure and nephrolithiasis. RHUC is caused by inactivating mutations in the SLC22A12 (RHUC type 1) or SLC2A9 (RHUC type 2) genes, which encode urate transporters URAT1 and GLUT9, respectively. In this study, our goal was to identify mutations associated with twenty-one new cases with RHUC through direct sequencing of SLC22A12 and SLC2A9 coding exons. Additionally, we carried out an SNPs-haplotype analysis to determine whether the rare SLC2A9 variant c.374C>T; p.(T125M), which is recurrent in Spanish families with RHUC type 2, had a common-linked haplotype. Six intragenic informative SNPs were analyzed using PCR amplification from genomic DNA and direct sequencing. Our results showed that ten patients carried the SLC22A12 mutation c.1400C>T; p.(T467M), ten presented the SLC2A9 mutation c.374C>T, and one carried a new SLC2A9 heterozygous mutation, c.593G>A; p.(R198H). Patients carrying the SLC2A9 mutation c.374C>T share a common-linked haplotype, confirming that it emerged due to a founder effect.

Keywords: GLUT9; URAT1; founder mutation; haplotype analysis; pathogenic variant; renal hypouricemia; renal tubular transport.

MeSH terms

  • Founder Effect
  • Glucose Transport Proteins, Facilitative / genetics
  • Humans
  • Kidney Calculi*
  • Organic Anion Transporters* / genetics
  • Organic Cation Transport Proteins / genetics
  • Uric Acid

Substances

  • Uric Acid
  • Glucose Transport Proteins, Facilitative
  • Organic Cation Transport Proteins
  • Organic Anion Transporters
  • SLC22A12 protein, human
  • SLC2A9 protein, human

Supplementary concepts

  • Renal hypouricemia