The mouse immunoglobulin kappa locus contains about 140 variable gene segments

Eur J Immunol. 1996 Jul;26(7):1613-20. doi: 10.1002/eji.1830260731.

Abstract

In continuation of our efforts to elucidate the immunoglobulin kappa locus of the mouse we analyzed 46 yeast artificial chromosomes (YACs) containing V kappa, J kappa and C kappa genes. The YACs, which were derived from DNA of C57BL/6 and C3H mice, ranged from 0.3-1.9 Mb in size. On the basis of hybridization with probes specific for the V kappa gene families a group of 13 YACs was selected for detailed analysis. The V kappa genes of the YACs were then characterized by hybridization to the family-specific probes and by the sizes of the EcoRI fragments on which they were found. This way evidence was obtained for 140 different V kappa gene signals on the YACs. Of these 63 had been characterized before on clones from a cosmid library of total mouse DNA (I. Zocher et al., Eur. J. Immunol. 1995. 25: 3326-3331) and 22 others were found now on cosmid clones derived from the YACs. Six V kappa genes of the previous study which were not found on the YACs are probably located outside of the kappa locus. The YACs were arrayed in a unique order establishing a YACs panel which most likely contains the whole kappa locus. The cosmid contigs and solitary cosmid clones which contain the 63 plus 22 V kappa gene signals mentioned above comprise about 2.0 Mb. Assuming that the remaining 55 V kappa genes are spaced at the same average distance of 24 kb, one may extrapolate to a locus size of 3.3 Mb.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Chromosomes, Fungal / immunology
  • Gene Library
  • Genes, Immunoglobulin*
  • Immunoglobulin Constant Regions / genetics
  • Immunoglobulin Constant Regions / isolation & purification
  • Immunoglobulin Variable Region / genetics*
  • Immunoglobulin Variable Region / isolation & purification
  • Immunoglobulin kappa-Chains / genetics*
  • Immunoglobulin kappa-Chains / isolation & purification
  • Mice
  • Mice, Inbred C57BL
  • Molecular Sequence Data
  • Multigene Family / immunology

Substances

  • Immunoglobulin Constant Regions
  • Immunoglobulin Variable Region
  • Immunoglobulin kappa-Chains