The genome organization and affinities of an Australian isolate of carrot mottle umbravirus

Virology. 1996 Oct 1;224(1):310-3. doi: 10.1006/viro.1996.0533.

Abstract

The genomic sequence of an Australian isolate of carrot mottle umbravirus (CMoV-A) was determined from cDNA generated from dsRNA. This provides the first data on the genome organization and phylogeny of an umbravirus. The 4201-nucleotide genome contains four major open reading frames (ORFs). Analysis suggests that ORF2 encodes an RNA-dependent RNA polymerase, that ORF4 encodes a movement protein, and that the virus has no coat protein gene. The functions of ORFs 1 and 3 remain unknown. ORF2 is probably translated following ribosomal frameshifting. ORFs 3 and 4 are probably translated from a subgenomic mRNA. Sequence comparisons showed CMoV-A to be closely related to pea enation mosaic RNA2 (PEMV-RNA2), but also to have affinities with the Bromoviridae. These findings shed light on the relationships between the luteoviruses, PEMV, and the umbraviruses and on the relationships between the carmo-like viruses and the Bromoviridae.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Australia
  • Base Sequence
  • Codon, Initiator
  • Daucus carota / virology
  • Genome, Viral*
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Open Reading Frames
  • Plant Viruses / classification
  • Plant Viruses / genetics*
  • Plant Viruses / pathogenicity
  • RNA Viruses / classification
  • RNA Viruses / genetics*
  • RNA Viruses / pathogenicity
  • RNA, Viral / chemistry
  • RNA, Viral / genetics

Substances

  • Codon, Initiator
  • RNA, Viral

Associated data

  • GENBANK/U57305