Beet soil-borne virus RNA 2: similarities and dissimilarities to the coat protein gene-carrying RNAs of other furoviruses

J Gen Virol. 1997 Feb:78 ( Pt 2):469-77. doi: 10.1099/0022-1317-78-2-469.

Abstract

The complete sequence of the 3454 nt of RNA 2 of the Ahlum isolate of beet soil-borne furovirus (BSBV) has been determined starting with two short stretches of cloned cDNA. Unknown parts of the sequence were amplified by means of RT-PCR techniques using combinations of specific and random primers. BSBV RNA 2 is more similar in its genetic organization to potato mop top virus (PMTV) RNA 3 than to any other furoviral RNA, although it is more than 1100 nt longer. Its 3'-end, unlike that of PMTV RNA 3, has the potential to fold into a tRNA-like structure. It contains one large open reading frame for a readthrough protein with a molecular mass of 104 kDa (104K protein) which is interrupted internally by an amber stop codon terminating the coding region for a protein of 19 kDa (19K), most likely the viral coat protein (CP). The readthrough domain of the 104K protein is much larger than that of PMTV, but the N- and C-proximal portions of these domains are similar for the two viruses. No serological relationships were found between the particles of the two viruses, although more than 50% of the amino acid sequences of the putative CPs are identical.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Capsid / genetics*
  • Capsid Proteins*
  • Genome, Viral
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Plant Viruses / genetics*
  • Polymerase Chain Reaction
  • RNA Viruses / genetics*
  • RNA, Viral / chemistry
  • RNA, Viral / genetics*
  • Sequence Alignment
  • Sequence Analysis, RNA
  • Vegetables / virology
  • Viral Proteins / genetics

Substances

  • Capsid Proteins
  • RNA, Viral
  • Viral Proteins
  • coat protein, Beet soil-borne virus

Associated data

  • GENBANK/U64512