Oligomerization of the transcription termination factor TTF-I: implications for the structural organization of ribosomal transcription units

Nucleic Acids Res. 1997 Mar 15;25(6):1142-7. doi: 10.1093/nar/25.6.1142.

Abstract

Mammalian ribosomal genes are flanked at their 5'and 3'ends by terminator sequences which are recognized by the transcription termination factor TTF-I. The occurrence of the same binding site upstream and downstream of the gene raises the possibility that TTF-I can interact with both sequences simultaneously and thus brings the terminator in the vicinity of the gene promoter by looping out the pre-rRNA coding sequence. To test this model, we have examined the ability of TTF-I to oligomerize and found that both full-length and N-terminally truncated versions of TTF-I form stable oligomeric structures. At least two domains of TTF-I located within the 184 N-terminal and 445 C-terminal amino acids, respectively, mediate the self-association of several TTF-I molecules. In support of the looping model, TTF-I is capable of linking two separate DNA fragments via binding to the target sites. This result indicates that in addition to its function in transcription termination, TTF-I may serve a role in the structural organization of the ribosomal genes which may be important for maintaining the high loading density of RNA polymerase I on active rRNA genes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Binding Sites
  • Chromatography, Gel
  • Cloning, Molecular
  • DNA-Binding Proteins / chemistry*
  • DNA-Binding Proteins / isolation & purification
  • DNA-Binding Proteins / metabolism*
  • Glutathione Transferase
  • Macromolecular Substances
  • Mammals
  • Mutagenesis, Site-Directed
  • Peptide Termination Factors / chemistry
  • Peptide Termination Factors / metabolism
  • Recombinant Fusion Proteins / biosynthesis
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / isolation & purification
  • Ribosomes / metabolism*
  • Sequence Deletion
  • Sequence Tagged Sites
  • Spodoptera
  • Transcription, Genetic*
  • Transfection

Substances

  • DNA-Binding Proteins
  • Macromolecular Substances
  • Peptide Termination Factors
  • Recombinant Fusion Proteins
  • Glutathione Transferase