Differential Methylation of H3K79 Reveals DOT1L Target Genes and Function in the Cerebellum In Vivo

Mol Neurobiol. 2019 Jun;56(6):4273-4287. doi: 10.1007/s12035-018-1377-1. Epub 2018 Oct 10.

Abstract

The disruptor of telomeric silencing 1-like (DOT1L) mediates methylation of histone H3 at position lysine 79 (H3K79). Conditional knockout of Dot1l in mouse cerebellar granule cells (Dot1l-cKOAtoh1) led to a smaller external granular layer with fewer precursors of granule neurons. Dot1l-cKOAtoh1 mice had impaired proliferation and differentiation of granular progenitors, which resulted in a smaller cerebellum. Mutant mice showed mild ataxia in motor behavior tests. In contrast, Purkinje cell-specific conditional knockout mice showed no obvious phenotype. Genome-wide transcription analysis of Dot1l-cKOAtoh1 cerebella using microarrays revealed changes in genes that function in cell cycle, cell migration, axon guidance, and metabolism. To identify direct DOT1L target genes, we used genome-wide profiling of H3K79me2 and transcriptional analysis. Analysis of differentially methylated regions (DR) and differentially expressed genes (DE) revealed in total 12 putative DOT1L target genes in Dot1l-cKOAtoh1 affecting signaling (Tnfaip8l3, B3galt5), transcription (Otx1), cell migration and axon guidance (Sema4a, Sema5a, Robo1), cholesterol and lipid metabolism (Lss, Cyp51), cell cycle (Cdkn1a), calcium-dependent cell-adhesion or exocytosis (Pcdh17, Cadps2), and unknown function (Fam174b). Dysregulated expression of these target genes might be implicated in the ataxia phenotype observed in Dot1l-cKOAtoh1.

Keywords: Ataxia; Atoh1; Epigenetics; Purkinje cell.

MeSH terms

  • Animals
  • Axon Guidance / genetics
  • Cell Cycle
  • Cell Differentiation
  • Cell Movement
  • Cell Proliferation
  • Cell Survival
  • Cerebellum / metabolism*
  • Cholesterol / metabolism
  • Gene Expression Regulation
  • Histone-Lysine N-Methyltransferase
  • Histones / metabolism*
  • Lysine / metabolism*
  • Methylation
  • Methyltransferases / metabolism*
  • Mice, Inbred C57BL
  • Mice, Knockout
  • Neural Stem Cells / cytology
  • Neural Stem Cells / metabolism
  • Neurons / cytology
  • Neurons / metabolism
  • Stress, Physiological
  • Transcriptome / genetics

Substances

  • Histones
  • Cholesterol
  • Dot1l protein, mouse
  • Methyltransferases
  • Histone-Lysine N-Methyltransferase
  • Lysine