The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization

Plant Mol Biol. 2001 Feb;45(3):307-15. doi: 10.1023/a:1006478403810.

Abstract

The chloroplast chromosome of spinach (Spinacia oleracea) is a double-stranded circular DNA molecule of 150,725 nucleotide pairs. A comparison of this chromosome with those of the three other autotrophic dicotyledons for which complete DNA sequences of plastid chromosomes are available confirms a conserved overall structure. Three classes of open reading frames were distinguished: (1) genes of known function which include 108 unique loci, (2) three hypothetical chloroplast reading frames (ycfs) that are highly conserved interspecifically, and (3) species-specific or rapidly diverging 'open reading frames'. A detailed transcript study of one of the latter (ycf15) shows that these loci may be transcribed, but do not constitute protein-coding genes.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA, Chloroplast / chemistry
  • DNA, Chloroplast / genetics*
  • DNA, Circular / genetics
  • Genes, Plant / genetics
  • Molecular Sequence Data
  • Open Reading Frames / genetics
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Spinacia oleracea / genetics*

Substances

  • DNA, Chloroplast
  • DNA, Circular

Associated data

  • GENBANK/J01442
  • GENBANK/M55297
  • GENBANK/X00795
  • GENBANK/X01724
  • GENBANK/X04185
  • GENBANK/X05916