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Items: 1 to 20 of 34

1.

A Genetic System for Methanocaldococcus jannaschii: An Evolutionary Deeply Rooted Hyperthermophilic Methanarchaeon.

Susanti D, Frazier MC, Mukhopadhyay B.

Front Microbiol. 2019 Jul 3;10:1256. doi: 10.3389/fmicb.2019.01256. eCollection 2019.

2.

Feature selection for gene prediction in metagenomic fragments.

Al-Ajlan A, El Allali A.

BioData Min. 2018 Jun 7;11:9. doi: 10.1186/s13040-018-0170-z. eCollection 2018.

3.
4.

Periodic distribution of a putative nucleosome positioning motif in human, nonhuman primates, and archaea: mutual information analysis.

Sosa D, Miramontes P, Li W, Mireles V, Bobadilla JR, José MV.

Int J Genomics. 2013;2013:963956. doi: 10.1155/2013/963956. Epub 2013 Jun 10.

5.

Expression of antibodies using single open reading frame (sORF) vector design: Demonstration of manufacturing feasibility.

Gion WR, Davis-Taber RA, Regier DA, Fung E, Medina L, Santora LC, Bose S, Ivanov AV, Perilli-Palmer BA, Chumsae CM, Matuck JG, Kunes YZ, Carson GR.

MAbs. 2013 Jul-Aug;5(4):595-607. doi: 10.4161/mabs.25161. Epub 2013 May 31.

6.

Similar gene estimates from circular and linear standards in quantitative PCR analyses using the prokaryotic 16S rRNA gene as a model.

Oldham AL, Duncan KE.

PLoS One. 2012;7(12):e51931. doi: 10.1371/journal.pone.0051931. Epub 2012 Dec 19.

7.

Solitary restriction endonucleases in prokaryotic genomes.

Ershova AS, Karyagina AS, Vasiliev MO, Lyashchuk AM, Lunin VG, Spirin SA, Alexeevski AV.

Nucleic Acids Res. 2012 Nov 1;40(20):10107-15. doi: 10.1093/nar/gks853. Epub 2012 Sep 10.

8.

DNA replication and strand asymmetry in prokaryotic and mitochondrial genomes.

Xia X.

Curr Genomics. 2012 Mar;13(1):16-27. doi: 10.2174/138920212799034776.

9.

Tracing lifestyle adaptation in prokaryotic genomes.

Altermann E.

Front Microbiol. 2012 Feb 21;3:48. doi: 10.3389/fmicb.2012.00048. eCollection 2012.

10.

Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus.

Tang KH, Barry K, Chertkov O, Dalin E, Han CS, Hauser LJ, Honchak BM, Karbach LE, Land ML, Lapidus A, Larimer FW, Mikhailova N, Pitluck S, Pierson BK, Blankenship RE.

BMC Genomics. 2011 Jun 29;12:334. doi: 10.1186/1471-2164-12-334.

11.

Ribosomal protein L7Ae is a subunit of archaeal RNase P.

Cho IM, Lai LB, Susanti D, Mukhopadhyay B, Gopalan V.

Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14573-8. doi: 10.1073/pnas.1005556107. Epub 2010 Jul 30.

12.

Unsupervised statistical clustering of environmental shotgun sequences.

Kislyuk A, Bhatnagar S, Dushoff J, Weitz JS.

BMC Bioinformatics. 2009 Oct 2;10:316. doi: 10.1186/1471-2105-10-316.

13.

Messenger RNA processing in Methanocaldococcus (Methanococcus) jannaschii.

Zhang J, Olsen GJ.

RNA. 2009 Oct;15(10):1909-16. doi: 10.1261/rna.1715209. Epub 2009 Aug 28.

14.

A method for identification of selenoprotein genes in archaeal genomes.

Li M, Huang Y, Xiao Y.

Genomics Proteomics Bioinformatics. 2009 Jun;7(1-2):62-70. doi: 10.1016/S1672-0229(08)60034-0.

15.

The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods.

Foster PG, Cox CJ, Embley TM.

Philos Trans R Soc Lond B Biol Sci. 2009 Aug 12;364(1527):2197-207. doi: 10.1098/rstb.2009.0034.

16.

Protein-coding gene promoters in Methanocaldococcus (Methanococcus) jannaschii.

Zhang J, Li E, Olsen GJ.

Nucleic Acids Res. 2009 Jun;37(11):3588-601. doi: 10.1093/nar/gkp213. Epub 2009 Apr 9.

17.

On the evolution of the standard genetic code: vestiges of critical scale invariance from the RNA world in current prokaryote genomes.

José MV, Govezensky T, García JA, Bobadilla JR.

PLoS One. 2009;4(2):e4340. doi: 10.1371/journal.pone.0004340. Epub 2009 Feb 2.

18.

Using shotgun sequence data to find active restriction enzyme genes.

Zheng Y, Posfai J, Morgan RD, Vincze T, Roberts RJ.

Nucleic Acids Res. 2009 Jan;37(1):e1. doi: 10.1093/nar/gkn883. Epub 2008 Nov 6.

19.

Gene prediction in metagenomic fragments: a large scale machine learning approach.

Hoff KJ, Tech M, Lingner T, Daniel R, Morgenstern B, Meinicke P.

BMC Bioinformatics. 2008 Apr 28;9:217. doi: 10.1186/1471-2105-9-217.

20.

Prokaryotic gene finding based on physicochemical characteristics of codons calculated from molecular dynamics simulations.

Singhal P, Jayaram B, Dixit SB, Beveridge DL.

Biophys J. 2008 Jun;94(11):4173-83. doi: 10.1529/biophysj.107.116392. Epub 2008 Mar 7.

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