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Differential transcriptome analysis of enterohemorrhagic Escherichia coli strains reveals differences in response to plant-derived compounds.

Bufe T, Hennig A, Klumpp J, Weiss A, Nieselt K, Schmidt H.

BMC Microbiol. 2019 Sep 5;19(1):212. doi: 10.1186/s12866-019-1578-4.


Inactivation of a Mismatch-Repair System Diversifies Genotypic Landscape of Escherichia coli During Adaptive Laboratory Evolution.

Kang M, Kim K, Choe D, Cho S, Kim SC, Palsson B, Cho BK.

Front Microbiol. 2019 Aug 16;10:1845. doi: 10.3389/fmicb.2019.01845. eCollection 2019.


DIpartite: A tool for detecting bipartite motifs by considering base interdependencies.

Vahed M, Ishihara JI, Takahashi H.

PLoS One. 2019 Aug 30;14(8):e0220207. doi: 10.1371/journal.pone.0220207. eCollection 2019.


Amino Acid Substitutions and Differential Gene Expression of Outer Membrane Proteins in Adherent-Invasive Escherichia coli.

Camprubí-Font C, Ruiz Del Castillo B, Barrabés S, Martínez-Martínez L, Martinez-Medina M.

Front Microbiol. 2019 Aug 6;10:1707. doi: 10.3389/fmicb.2019.01707. eCollection 2019.


Distinct mechanisms of microRNA sorting into cancer cell-derived extracellular vesicle subtypes.

Temoche-Diaz MM, Shurtleff MJ, Nottingham RM, Yao J, Fadadu RP, Lambowitz AM, Schekman R.

Elife. 2019 Aug 22;8. pii: e47544. doi: 10.7554/eLife.47544.


Temperature Response of Planktonic Microbiota in Remote Alpine Lakes.

Jiang Y, Huang H, Ma T, Ru J, Blank S, Kurmayer R, Deng L.

Front Microbiol. 2019 Jul 31;10:1714. doi: 10.3389/fmicb.2019.01714. eCollection 2019.


Transposon-insertion sequencing screens unveil requirements for EHEC growth and intestinal colonization.

Warr AR, Hubbard TP, Munera D, Blondel CJ, Abel Zur Wiesch P, Abel S, Wang X, Davis BM, Waldor MK.

PLoS Pathog. 2019 Aug 12;15(8):e1007652. doi: 10.1371/journal.ppat.1007652. eCollection 2019 Aug.


Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences.

Lakin SM, Kuhnle A, Alipanahi B, Noyes NR, Dean C, Muggli M, Raymond R, Abdo Z, Prosperi M, Belk KE, Morley PS, Boucher C.

Commun Biol. 2019 Aug 6;2:294. doi: 10.1038/s42003-019-0545-9. eCollection 2019.


Nuclear Import of a Secreted "Candidatus Liberibacter asiaticus" Protein is Temperature Dependent and Contributes to Pathogenicity in Nicotiana benthamiana.

Liu X, Fan Y, Zhang C, Dai M, Wang X, Li W.

Front Microbiol. 2019 Jul 24;10:1684. doi: 10.3389/fmicb.2019.01684. eCollection 2019.


Real-Time Selective Sequencing with RUBRIC: Read Until with Basecall and Reference-Informed Criteria.

Edwards HS, Krishnakumar R, Sinha A, Bird SW, Patel KD, Bartsch MS.

Sci Rep. 2019 Aug 7;9(1):11475. doi: 10.1038/s41598-019-47857-3.


Herbal Formula Fo Shou San Attenuates Alzheimer's Disease-Related Pathologies via the Gut-Liver-Brain Axis in APP/PS1 Mouse Model of Alzheimer's Disease.

Lu J, Guo P, Liu X, Zhang Y, Guo X, Gao X, Chen Y.

Evid Based Complement Alternat Med. 2019 Jun 17;2019:8302950. doi: 10.1155/2019/8302950. eCollection 2019.


Toxin-mediated ribosome stalling reprograms the Mycobacterium tuberculosis proteome.

Barth VC, Zeng JM, Vvedenskaya IO, Ouyang M, Husson RN, Woychik NA.

Nat Commun. 2019 Jul 10;10(1):3035. doi: 10.1038/s41467-019-10869-8.


Targeting Mannitol Metabolism as an Alternative Antimicrobial Strategy Based on the Structure-Function Study of Mannitol-1-Phosphate Dehydrogenase in Staphylococcus aureus.

Nguyen T, Kim T, Ta HM, Yeo WS, Choi J, Mizar P, Lee SS, Bae T, Chaurasia AK, Kim KK.

MBio. 2019 Jul 9;10(4). pii: e02660-18. doi: 10.1128/mBio.02660-18.


Generation of an E. coli platform strain for improved sucrose utilization using adaptive laboratory evolution.

Mohamed ET, Mundhada H, Landberg J, Cann I, Mackie RI, Nielsen AT, Herrgård MJ, Feist AM.

Microb Cell Fact. 2019 Jun 29;18(1):116. doi: 10.1186/s12934-019-1165-2.


Transcription factor YcjW controls the emergency H2S production in E. coli.

Luhachack L, Rasouly A, Shamovsky I, Nudler E.

Nat Commun. 2019 Jun 28;10(1):2868. doi: 10.1038/s41467-019-10785-x.


Bacteria from natural populations transfer plasmids mostly towards their kin.

Dimitriu T, Marchant L, Buckling A, Raymond B.

Proc Biol Sci. 2019 Jun 26;286(1905):20191110. doi: 10.1098/rspb.2019.1110. Epub 2019 Jun 26.


Suppressor mutations in ribosomal proteins and FliY restore Bacillus subtilis swarming motility in the absence of EF-P.

Hummels KR, Kearns DB.

PLoS Genet. 2019 Jun 25;15(6):e1008179. doi: 10.1371/journal.pgen.1008179. eCollection 2019 Jun.


Assembly and Characterization of a Pathogen Strain Collection for Produce Safety Applications: Pre-growth Conditions Have a Larger Effect on Peroxyacetic Acid Tolerance Than Strain Diversity.

Harrand AS, Kovac J, Carroll LM, Guariglia-Oropeza V, Kent DJ, Wiedmann M.

Front Microbiol. 2019 May 31;10:1223. doi: 10.3389/fmicb.2019.01223. eCollection 2019.


Carriage of Shiga toxin phage profoundly affects Escherichia coli gene expression and carbon source utilization.

Berger P, Kouzel IU, Berger M, Haarmann N, Dobrindt U, Koudelka GB, Mellmann A.

BMC Genomics. 2019 Jun 17;20(1):504. doi: 10.1186/s12864-019-5892-x.

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