Gut colonization by Bacteroides requires translation by an EF-G paralog lacking GTPase activity

EMBO J. 2023 Jan 16;42(2):e112372. doi: 10.15252/embj.2022112372. Epub 2022 Dec 6.

Abstract

Protein synthesis is crucial for cell growth and survival yet one of the most energy-consuming cellular processes. How, then, do cells sustain protein synthesis under starvation conditions when energy is limited? To accelerate the translocation of mRNA-tRNAs through the ribosome, bacterial elongation factor G (EF-G) hydrolyzes energy-rich guanosine triphosphate (GTP) for every amino acid incorporated into a protein. Here, we identify an EF-G paralog-EF-G2-that supports translocation without hydrolyzing GTP in the gut commensal bacterium Bacteroides thetaiotaomicron. EF-G2's singular ability to sustain protein synthesis, albeit at slow rates, is crucial for bacterial gut colonization. EF-G2 is ~10-fold more abundant than canonical EF-G1 in bacteria harvested from murine ceca and, unlike EF-G1, specifically accumulates during carbon starvation. Moreover, we uncover a 26-residue region unique to EF-G2 that is essential for protein synthesis, EF-G2 dissociation from the ribosome, and responsible for the absence of GTPase activity. Our findings reveal how cells curb energy consumption while maintaining protein synthesis to advance fitness in nutrient-fluctuating environments.

Keywords: Bacteroides thetaiotaomicron; GTP hydrolysis; elongation factor G; paralogous proteins; ribosome.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bacteroides* / genetics
  • Bacteroides* / metabolism
  • Guanosine Triphosphate / metabolism
  • Hydrolysis
  • Mice
  • Peptide Elongation Factor G* / chemistry
  • Peptide Elongation Factor G* / genetics
  • RNA, Transfer / metabolism
  • Ribosomes / metabolism

Substances

  • Guanosine Triphosphate
  • Peptide Elongation Factor G
  • RNA, Transfer
  • GMF2 protein, mouse

Associated data

  • PDB/8DMF