Structural implications of Siglec-5-mediated sialoglycan recognition

J Mol Biol. 2008 Jan 11;375(2):437-47. doi: 10.1016/j.jmb.2007.10.009. Epub 2007 Oct 11.

Abstract

Sialic acid (Sia) Ig-like binding lectins are important mediators of recognition and signaling events among myeloid cells. To investigate the molecular mechanism underlying sialic acid Ig-like lectin (Siglec) functions, we determined the crystal structure of the two N-terminal extracellular domains of human myeloid cell inhibitory receptor Siglec-5 (CD170) and its complexes with two sialylated carbohydrates. The native structure revealed an unusual conformation of the CC' ligand specificity loop and a unique interdomain disulfide bond. The alpha(2,3)- and alpha(2,6)-sialyllactose complexed structures showed a conserved Sia recognition motif that involves both Arg124 and a portion of the G-strand in the V-set domain forming beta-sheet-like hydrogen bonds with the glycerol side chain of the Sia. Only few protein contacts to the subterminal sugars are observed and mediated by the highly variable GG' linker and CC' loop. These structural observations, in conjunction with surface plasmon resonance binding assays, provide mechanistic insights into linkage-dependent Siglec carbohydrate recognition and suggest that Siglec-5 and other CD33-related Siglec receptors are more promiscuous in sialoglycan recognition than previously understood.

MeSH terms

  • Amino Acid Sequence
  • Antigens, CD / chemistry*
  • Antigens, CD / genetics
  • Antigens, CD / metabolism
  • Antigens, Differentiation, Myelomonocytic / chemistry*
  • Antigens, Differentiation, Myelomonocytic / genetics
  • Antigens, Differentiation, Myelomonocytic / metabolism
  • Binding Sites
  • Crystallization
  • Disulfides / chemistry
  • Escherichia coli / genetics
  • Humans
  • Hydrogen Bonding
  • Kinetics
  • Lectins / chemistry*
  • Lectins / genetics
  • Lectins / metabolism
  • Ligands
  • Models, Chemical
  • Models, Molecular
  • Molecular Sequence Data
  • Polysaccharides / metabolism*
  • Protein Binding
  • Protein Conformation
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Sequence Homology, Amino Acid
  • Sialic Acid Binding Immunoglobulin-like Lectins
  • Static Electricity
  • Surface Plasmon Resonance
  • X-Ray Diffraction

Substances

  • Antigens, CD
  • Antigens, Differentiation, Myelomonocytic
  • Disulfides
  • Lectins
  • Ligands
  • Polysaccharides
  • Recombinant Proteins
  • SIGLEC5 protein, human
  • Sialic Acid Binding Immunoglobulin-like Lectins