Conserved structural elements in the V3 crown of HIV-1 gp120

Nat Struct Mol Biol. 2010 Aug;17(8):955-61. doi: 10.1038/nsmb.1861. Epub 2010 Jul 11.

Abstract

Binding of the third variable region (V3) of the HIV-1 envelope glycoprotein gp120 to the cell-surface coreceptors CCR5 or CXCR4 during viral entry suggests that there are conserved structural elements in this sequence-variable region. These conserved elements could serve as epitopes to be targeted by a vaccine against HIV-1. Here we perform a systematic structural analysis of representative human anti-V3 monoclonal antibodies in complex with V3 peptides, revealing that the crown of V3 has four conserved structural elements: an arch, a band, a hydrophobic core and the peptide backbone. These are either unaffected by or are subject to minimal sequence variation. As these regions are targeted by cross-clade neutralizing human antibodies, they provide a blueprint for the design of vaccine immunogens that could elicit broadly cross-reactive protective antibodies.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Antibodies, Monoclonal / immunology
  • Antibody Specificity / immunology
  • Conserved Sequence*
  • Crystallography, X-Ray
  • Epitopes / immunology
  • HIV Envelope Protein gp120 / chemistry*
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Immunoglobulin Fragments / chemistry
  • Models, Molecular
  • Molecular Sequence Data
  • Peptides / chemistry
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Sequence Alignment
  • Species Specificity

Substances

  • Antibodies, Monoclonal
  • Epitopes
  • HIV Envelope Protein gp120
  • Immunoglobulin Fragments
  • Peptides