Crystal structure of the GTPase domain of rat dynamin 1

Proc Natl Acad Sci U S A. 2005 Sep 13;102(37):13093-8. doi: 10.1073/pnas.0506491102. Epub 2005 Sep 2.

Abstract

Here, we present the 1.9-A crystal structure of the nucleotide-free GTPase domain of dynamin 1 from Rattus norvegicus. The structure corresponds to an extended form of the canonical GTPase fold observed in Ras proteins. Both nucleotide-binding switch motifs are well resolved, adopting conformations that closely resemble a GTP-bound state not previously observed for nucleotide-free GTPases. Two highly conserved arginines, Arg-66 and Arg-67, greatly restrict the mobility of switch I and are ideally positioned to relay information about the nucleotide state to other parts of the protein. Our results support a model in which switch I residue Arg-59 gates GTP binding in an assembly-dependent manner and the GTPase effector domain functions as an assembly-dependent GTPase activating protein in the fashion of RGS-type GAPs.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Arginine
  • Catalysis
  • Crystallization
  • Crystallography, X-Ray
  • Dynamin I / chemistry*
  • Dynamin I / genetics
  • Dynamin I / metabolism
  • Enzyme Activation / genetics
  • GTP Phosphohydrolases / chemistry*
  • GTP Phosphohydrolases / genetics
  • GTP Phosphohydrolases / metabolism
  • Guanosine Triphosphate / metabolism
  • Kinetics
  • Mutation
  • Protein Structure, Tertiary
  • Rats

Substances

  • Guanosine Triphosphate
  • Arginine
  • Dynamin I
  • GTP Phosphohydrolases