Structural and functional linkages between subunit interfaces in mammalian pyruvate kinase

J Mol Biol. 2001 Sep 21;312(3):525-40. doi: 10.1006/jmbi.2001.4978.

Abstract

Mammalian pyruvate kinase (PK) is a four-domain enzyme that is active as a homo-tetramer. Tissue-specific isozymes of PK exhibit distinct levels of allosteric regulation. PK expressed in muscle tissue (M1-PK) shows hyperbolic steady-state kinetics, whereas PK expressed in kidney tissue (M2-PK) displays sigmoidal kinetics. Rabbit M1 and M2-PK are isozymes whose sequences differ in only 22 out of 530 residues per subunit, and these changes are localized in an inter-subunit interface. Previous studies have shown that a single amino acid mutation to M1-PK at either the Y (S402P) or Z (T340 M) subunit interface can confer a level of allosteric regulation that is intermediate to M1-PK and M2-PK. In an effort to elucidate the roles of the inter-subunit interaction in signal transmission and the functional/structural connectivity between these interfaces, the S402P mutant of M1-PK was crystallized and its structure resolved to 2.8 A. Although the overall S402P M1-PK structure is nearly identical with the wild-type structure within experimental error, significant differences in the conformation of the backbone are found at the site of mutation along the Y interface. In addition, there is a significant change along the Z interface, namely, a loss of an inter-subunit salt-bridge between Asp177 of domain B and Arg341 of domain A of the opposing subunit. Concurrent with the loss of the salt-bridge is an increase in the degree of rotational flexibility of domain B that constitutes the active site. Comparison of previous PK structures shows a correlation between an increase in this domain movement with the loss of the Asp177: Arg341 salt-bridge. These results identify the structural linkages between the Y and Z interfaces in regulating the interconversion of conformational states of rabbit M1-PK.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Allosteric Regulation
  • Amino Acid Substitution
  • Animals
  • Binding Sites
  • Crystallography, X-Ray
  • Dimerization
  • Fructosediphosphates / metabolism
  • Isoenzymes / chemistry
  • Isoenzymes / genetics
  • Isoenzymes / metabolism
  • Kidney / enzymology*
  • Models, Molecular
  • Muscle, Skeletal / enzymology*
  • Mutation
  • Organ Specificity
  • Protein Structure, Quaternary
  • Protein Structure, Tertiary
  • Protein Subunits
  • Pyruvate Kinase / chemistry*
  • Pyruvate Kinase / genetics
  • Pyruvate Kinase / metabolism*
  • Rabbits
  • Static Electricity
  • Structure-Activity Relationship

Substances

  • Fructosediphosphates
  • Isoenzymes
  • Protein Subunits
  • Pyruvate Kinase
  • fructose-1,6-diphosphate

Associated data

  • PDB/1F3W
  • PDB/1F3X