Crystal structure of the actin-binding domain of alpha-actinin 1: evaluating two competing actin-binding models

J Struct Biol. 2006 Aug;155(2):230-8. doi: 10.1016/j.jsb.2006.01.013. Epub 2006 Apr 25.

Abstract

Alpha-actinin belongs to the spectrin family of actin crosslinking and bundling proteins that function as key regulators of cell motility, morphology and adhesion. The actin-binding domain (ABD) of these proteins consists of two consecutive calponin homology (CH) domains. Electron microscopy studies on ABDs appear to support two competing actin-binding models, extended and compact, whereas the crystal structures typically display a compact conformation. We have determined the 1.7A resolution structure of the ABD of alpha-actinin 1, a ubiquitously expressed isoform. The structure displays the classical compact conformation. We evaluated the two binding models by surface conservation analysis. The results show a conserved surface that spans both domains and corresponds to two previously identified actin-binding sites (ABS2 and ABS3). A third, and probably less important site, ABS1, is mostly buried in the compact conformation. However, a thorough examination of existing structures suggests a weak and semi-polar binding interface between the two CHs, leaving open the possibility of domain reorientation or opening. Our results are consistent with a two-step binding mechanism in which the ABD interacts first in the compact form observed in the structures, and then transitions toward a higher affinity state, possibly through minor rearrangement of the domains.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Actinin / chemistry*
  • Actinin / genetics
  • Actinin / metabolism
  • Actins / chemistry
  • Actins / metabolism
  • Amino Acid Sequence
  • Animals
  • Binding Sites
  • Crystallography, X-Ray / methods*
  • Humans
  • Mice
  • Models, Biological
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Binding
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Rats
  • Sequence Homology, Amino Acid

Substances

  • Actins
  • Actinin

Associated data

  • PDB/1EYI
  • PDB/1EYN