The crystal structure of the extracellular domain of the inhibitor receptor expressed on myeloid cells IREM-1

J Mol Biol. 2007 Mar 23;367(2):310-8. doi: 10.1016/j.jmb.2007.01.011. Epub 2007 Jan 10.

Abstract

The immune receptors expressed on myeloid cells (IREM) are type I transmembrane proteins encoded on human chromosome 17 (17q25.1), whose function is believed to be important in controlling inflammation. To date, three IREM receptors have been identified. IREM-1 functions as an inhibitory receptor, whereas IREM-2 and IREM-3 serve an activating function. Here, we report the crystal structure of IREM-1 extracellular domain at 2.6 A resolution. The overall fold of IREM-1 resembles that of a V-type immunoglobulin domain, and reveals overall close homology with immunoglobulin domains from other immunoreceptors such as CLM-1, TREM-1, TLT-1 and NKp44. Comparing the surface electrostatic potential and hydrophobicity of IREM-1 with its murine homologous CLM-1, we observed unique structural properties for the complementary determining region of IREM-1, which suggests that they may be involved in recognition of the IREM-1 ligand. Particularly interesting is the structural conformation and physical properties of the antibody's equivalent CDR3 loop, which we show to be a structurally variable region of the molecule and therefore could be the main structural determinant for ligand discrimination and binding. In addition, the analysis of the IREM-1 structure revealed the presence of four structurally different cavities. Three of these cavities form a continuous hydrophobic groove on the IREM-1 surface, which point to a region of the molecule capable of accommodating potential ligands.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antigens, Surface / chemistry*
  • Antigens, Surface / genetics
  • Crystallography, X-Ray
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Ligands
  • Membrane Glycoproteins / chemistry*
  • Membrane Glycoproteins / genetics
  • Mice
  • Models, Molecular*
  • Molecular Sequence Data
  • Protein Structure, Tertiary
  • Receptors, Immunologic / chemistry
  • Receptors, Immunologic / genetics
  • Sequence Homology, Amino Acid
  • Static Electricity

Substances

  • Antigens, Surface
  • CD300C protein, human
  • CLM-1 protein, mouse
  • Ligands
  • Membrane Glycoproteins
  • Receptors, Immunologic

Associated data

  • PDB/2NMS