Fibrinogen variant BbetaD432A has normal polymerization but does not bind knob "B"

Blood. 2009 Apr 30;113(18):4425-30. doi: 10.1182/blood-2008-09-178178. Epub 2008 Dec 15.

Abstract

Fibrinogen residue Bbeta432Asp is part of hole "b" that interacts with knob "B," whose sequence starts with Gly-His-Arg-Pro-amide (GHRP). Because previous studies showed BbetaD432A has normal polymerization, we hypothesized that Bbeta432Asp is not critical for knob "B" binding and that new knob-hole interactions would compensate for the loss of this Asp residue. To test this hypothesis, we solved the crystal structure of fragment D from BbetaD432A. Surprisingly, the structure (rfD-BbetaD432A+GH) showed the peptide GHRP was not bound to hole "b." We then re-evaluated the polymerization of this variant by examining clot turbidity, clot structure, and the rate of FXIIIa cross-linking. The turbidity and the rate of gamma-gamma dimer formation for BbetaD432A were indistinguishable compared with normal fibrinogen. Scanning electron microscopy showed no significant differences between the clots of BbetaD432A and normal, but the thrombin-derived clots had thicker fibers than clots obtained from batroxobin, suggesting that cleavage of FpB is more important than "B:b" interactions. We conclude that hole "b" and "B:b" knob-hole binding per se have no influence on fibrin polymerization.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Batroxobin / pharmacology
  • Binding Sites
  • CHO Cells
  • Calcium / metabolism
  • Cells, Cultured
  • Cricetinae
  • Cricetulus
  • Cross-Linking Reagents / pharmacology
  • Crystallography, X-Ray
  • Factor XIII / metabolism
  • Fibrin / metabolism
  • Fibrinogen / chemistry*
  • Fibrinogen / genetics
  • Fibrinogen / metabolism*
  • Fibrinolytic Agents / pharmacology
  • Hemostatics / pharmacology
  • Humans
  • Microscopy, Electron, Scanning
  • Oligopeptides / chemistry*
  • Oligopeptides / metabolism*
  • Peptide Fragments / chemistry
  • Peptide Fragments / metabolism
  • Protein Binding
  • Protein Structure, Tertiary
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Thrombin / pharmacology

Substances

  • BBeta fibrinogen
  • Cross-Linking Reagents
  • Fibrinolytic Agents
  • Hemostatics
  • Oligopeptides
  • Peptide Fragments
  • Recombinant Proteins
  • glycyl-histidyl-arginyl-proline
  • Fibrin
  • Fibrinogen
  • Factor XIII
  • Batroxobin
  • Thrombin
  • Calcium