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26947024,18554330,30222737,26444226,10632877,23396913,34124945,15458416,25102178,10610761,18790862,15186424,32120891,7536935,17986081,2539359,16238625,10347234,8850348,35704183,3019999,28821455,26530381,32426857,8999816,10660686,31471263,30957856,17151069,6297751,12946345,9334322,37141391,26447825,23201416,27551021,11399091,27783696,7715458,28398568,1653212,22916023,27025941,2548062,22373098,12694626,8294458,9139742,29177738,1849710,16757578,23923635,6297752,12456359,10753935,7774596,29352745,24563461,12604525,15659402,2991845,2559316,8407851,1334483,31950157,11895436,26496944,26248366,16135230,17560602,11493711,28842872,24164596,12604539,12788950,12566398,8206854,25965344,2547660,33125364,7511771,36420903,9473443,17980389,10713132,29179918,9435021,1313943,6090123,17093499,2556367,2835168,1332053,8594197,16677300,7783621,21076033,8389213,8078483,15522872,1315267,1324199,36713152,20675723,1317847,33657379,6094979,27557712,10347233,7968544,15897198,30282997,35950487,2821270,2827163,8760899,2170028,15342629,12725933,27378778,28463980,30220456,15047530,1646892,19553196,9811643,10583380,7616959,3006926,24712739,231726,12241080,34755863,32156825,8635745,337300,8384681,33905522,6092846,7968526,2833949,20952390,28085056,2840207,22457353,23455340,26858102,8104339,9352909,28939594,11254973,6326814,28977560,3035573,7783632,8206945,32113983,7525276,7798272,20696938,11269497,30841529,1488550,1846630,25875362,7830553,2991240,8113195,12882514,26527723,1344994,33539568,30316784,23913317,12151411,6309403,10575351,12813060,9263411,27001450,11988630,17701288,2163765,10486002,2995687,8302289,27899559,2546002,2830029,200930,17400739,2987184,10944214,19001378,28842485,7565605,32592697,2823250,6294483,12218017,11918669,15788400,14507384,27171414,29893908,2548199,8733233,15136745,22457352,29971724,2844734,36983048,1965069,21169356,35927234,10692165,8960374,2844526,10760142,2984680,36565252,9078387,21098118,7489919,8294462,24990966,30445553,31953321,2991925,33830249,6290848,30872616,9442027,11700321,10322021,35212387,8940171,2845101,34224593,14512422,2981821,7590259,21051354,9235964,6330114,25829493,22989710,2176633,17009874,11777918,16166072,2535966,24043617,3017951,18982424,17220464,1318314,7523360,29772727,16407212,1332935,22844097,8389456,11809928,6276673,30875939,2138991,35920318,16079354,33693789,31319794,3894008,35420137,20210704,23066834,31354687,8413178,26847200,16936317,21347852,30617245,28268090,1326763,7929430,1322887,25176012,34398513,32926139,14993313,3024156,12904550,12519191,23209025,3029380,2183010,24244182,24974097,19997889,30605451,12354226,14762016,1656495,6305584,23882012,1720186,9044271,20929866,2555155,20215433,10710719,24880688,32896031,32599919,32769985,23680786,6194415,14646202,11343799,1328167,26926630,6319961,28824578,15019780,20851892,34303706,6300778,24734910,12533486,19443439,2828768,19527654,10483733,11277926,12048189,32107311,11406172,20165898,1322881,9748489,8955393,34279217,31216038,29474582,1330320,11240374,27402764,27791008,21880594,26783203,3020379,1327123,2160435,18586829,6264465,36916909,30060749,34339271,6265907,24990375,23804759,31943854,1400182,26566111,6260741,28887044,20723754,3037487,2649489,31777935,30517674,28970337,7017351,10633122,6345510,10024438,6998952,7476870,31266870,36549664,29267353,22343632,16385052,1670937,12509418,16272394,28981718,27938663,32516653,6256766,31390324,27349932,25036631,32447233,6165987,7557335,6323018,32723920,1650909,26784695,378403,30065714,20360860,6267017,25357144,35704187,33827922,21406074,7608985,22130995,25485196,1321123,35483781,31914390,29177730,32913330,8274860,31178343,37102866,12839093,34439915,12213801,31626768,22184251,23828459,35811376,24158908,29741836,17353933,32277049,21318561,3001028,15231817,36993624,29016854,35947649,21979917,36166952,8702938,31346236,15367714,33629756,9792711,29104020,6323967,35998348,36775125,34536319,12456361,29289567,26855771,28510215,31795919,26271994,27815900,34827187,32325866,2855556,26162680,11523794,33660781,2835665,36268121,35740956,27131367,221839,30996261,36063323,28653981,31720544,24301263,35861071,11279140,35655343,37089538,24507716,34783581,35421389,18365861,32049059,30552231,7934847,33554969,6085082,7513791,32678076,33931503,12456368,36971110,33553603,25972891,32681515,36248608,9498011,9182553,32544226,28510224,28510216,27600412,31665646,17954560,29662473,17505547,29879111,28510212,29657305,33217387,33959387,33553604,31806753,26949711,36711572,32082360,24066229,7088157,29642475,7428042,5277105,33562371,34177142,26029188,26484106,28510220,22379231,33357259,27666770,28510214,9707525[uid]

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Mutations reducing replication from R-loops suppress the defects of growth, chromosome segregation and DNA supercoiling in cells lacking topoisomerase I and RNase HI activity.

Usongo V, Martel M, Balleydier A, Drolet M. Usongo V, et al. DNA Repair (Amst). 2016 Apr;40:1-17. doi: 10.1016/j.dnarep.2016.02.001. Epub 2016 Feb 27. DNA Repair (Amst). 2016. PMID: 26947024

Depletion of RNase HI activity in Escherichia coli lacking DNA topoisomerase I leads to defects in DNA supercoiling and segregation.

Usongo V, Nolent F, Sanscartier P, Tanguay C, Broccoli S, Baaklini I, Drlica K, Drolet M. Usongo V, et al. Mol Microbiol. 2008 Aug;69(4):968-81. doi: 10.1111/j.1365-2958.2008.06334.x. Epub 2008 Jun 28. Mol Microbiol. 2008. PMID: 18554330 Free PMC article.

Topoisomerases I and III inhibit R-loop formation to prevent unregulated replication in the chromosomal Ter region of Escherichia coli.

Brochu J, Vlachos-Breton É, Sutherland S, Martel M, Drolet M. Brochu J, et al. PLoS Genet. 2018 Sep 17;14(9):e1007668. doi: 10.1371/journal.pgen.1007668. eCollection 2018 Sep. PLoS Genet. 2018. PMID: 30222737 Free PMC article.

Constitutive stable DNA replication in Escherichia coli cells lacking type 1A topoisomerase activity.

Martel M, Balleydier A, Sauriol A, Drolet M. Martel M, et al. DNA Repair (Amst). 2015 Nov;35:37-47. doi: 10.1016/j.dnarep.2015.08.004. Epub 2015 Sep 26. DNA Repair (Amst). 2015. PMID: 26444226

Isolation of the topB gene encoding DNA topoisomerase III as a multicopy suppressor of topA null mutations in Escherichia coli.

Broccoli S, Phoenix P, Drolet M. Broccoli S, et al. Mol Microbiol. 2000 Jan;35(1):58-68. doi: 10.1046/j.1365-2958.2000.01671.x. Mol Microbiol. 2000. PMID: 10632877 Free article.

Interplay between type 1A topoisomerases and gyrase in chromosome segregation in Escherichia coli.

Usongo V, Tanguay C, Nolent F, Bessong JE, Drolet M. Usongo V, et al. J Bacteriol. 2013 Apr;195(8):1758-68. doi: 10.1128/JB.02001-12. Epub 2013 Feb 8. J Bacteriol. 2013. PMID: 23396913 Free PMC article.

Topoisomerase I Essentiality, DnaA-Independent Chromosomal Replication, and Transcription-Replication Conflict in Escherichia coli.

Leela JK, Raghunathan N, Gowrishankar J. Leela JK, et al. J Bacteriol. 2021 Aug 9;203(17):e0019521. doi: 10.1128/JB.00195-21. Epub 2021 Aug 9. J Bacteriol. 2021. PMID: 34124945 Free PMC article.

RNase HI overproduction is required for efficient full-length RNA synthesis in the absence of topoisomerase I in Escherichia coli.

Baaklini I, Hraiky C, Rallu F, Tse-Dinh YC, Drolet M. Baaklini I, et al. Mol Microbiol. 2004 Oct;54(1):198-211. doi: 10.1111/j.1365-2958.2004.04258.x. Mol Microbiol. 2004. PMID: 15458416 Free article.

Roles of type 1A topoisomerases in genome maintenance in Escherichia coli.

Usongo V, Drolet M. Usongo V, et al. PLoS Genet. 2014 Aug 7;10(8):e1004543. doi: 10.1371/journal.pgen.1004543. eCollection 2014 Aug. PLoS Genet. 2014. PMID: 25102178 Free PMC article.

R-loop-dependent hypernegative supercoiling in Escherichia coli topA mutants preferentially occurs at low temperatures and correlates with growth inhibition.

Massé E, Drolet M. Massé E, et al. J Mol Biol. 1999 Nov 26;294(2):321-32. doi: 10.1006/jmbi.1999.3264. J Mol Biol. 1999. PMID: 10610761

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