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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2002 1
2004 1
2005 7
2006 3
2007 8
2008 16
2009 11
2010 17
2011 22
2012 18
2013 11
2014 14
2015 12
2016 11
2017 9
2018 10
2019 6
2020 4
2021 6
2022 4
2024 3

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172 results

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Page 1
High-definition spatial transcriptomics for in situ tissue profiling.
Vickovic S, Eraslan G, Salmén F, Klughammer J, Stenbeck L, Schapiro D, Äijö T, Bonneau R, Bergenstråhle L, Navarro JF, Gould J, Griffin GK, Borg Å, Ronaghi M, Frisén J, Lundeberg J, Regev A, Ståhl PL. Vickovic S, et al. Nat Methods. 2019 Oct;16(10):987-990. doi: 10.1038/s41592-019-0548-y. Epub 2019 Sep 9. Nat Methods. 2019. PMID: 31501547 Free PMC article.
Here, we developed high-definition spatial transcriptomics, which captures RNA from histological tissue sections on a dense, spatially barcoded bead array. Each experiment recovers several hundred thousand transcript-coupled spatial barcodes at 2-mum resolution, as …
Here, we developed high-definition spatial transcriptomics, which captures RNA from histological tissue sections on a dense, spatially barco …
BeadArray-based genotyping.
Butler H, Ragoussis J. Butler H, et al. Methods Mol Biol. 2008;439:53-74. doi: 10.1007/978-1-59745-188-8_4. Methods Mol Biol. 2008. PMID: 18370095
There is a demand for technologies that allow the interrogation of large numbers of SNP polymorphisms, both in whole-genome panels and in smaller custom designed sets, to attempt to elucidate the nature of complex disease through linkage and association studies. The Illumina …
There is a demand for technologies that allow the interrogation of large numbers of SNP polymorphisms, both in whole-genome panels and in sm …
beadarray: R classes and methods for Illumina bead-based data.
Dunning MJ, Smith ML, Ritchie ME, Tavaré S. Dunning MJ, et al. Bioinformatics. 2007 Aug 15;23(16):2183-4. doi: 10.1093/bioinformatics/btm311. Epub 2007 Jun 22. Bioinformatics. 2007. PMID: 17586828
The R/Bioconductor package beadarray allows raw data from Illumina experiments to be read and stored in convenient R classes. ...The data can then be summarized and stored in a format which can be used by other R/Bioconductor packages to perform downstream analyses. …
The R/Bioconductor package beadarray allows raw data from Illumina experiments to be read and stored in convenient R classes. …
Illumina universal bead arrays.
Fan JB, Gunderson KL, Bibikova M, Yeakley JM, Chen J, Wickham Garcia E, Lebruska LL, Laurent M, Shen R, Barker D. Fan JB, et al. Methods Enzymol. 2006;410:57-73. doi: 10.1016/S0076-6879(06)10003-8. Methods Enzymol. 2006. PMID: 16938546 Review.
It includes a miniaturized array platform where each individual feature is quality controlled and a versatile assay that can be adapted for various genetic analyses, such as single nucleotide polymorphism genotyping, DNA methylation detection, and gene expression profiling. This …
It includes a miniaturized array platform where each individual feature is quality controlled and a versatile assay that can be adapted for …
Epigenomics of Alzheimer's disease.
Bennett DA, Yu L, Yang J, Srivastava GP, Aubin C, De Jager PL. Bennett DA, et al. Transl Res. 2015 Jan;165(1):200-20. doi: 10.1016/j.trsl.2014.05.006. Epub 2014 May 16. Transl Res. 2015. PMID: 24905038 Free PMC article. Review.
We are in the midst of 2 large studies of human brains including coverage of more than 420,000 autosomal cytosine-guanine dinucleotides with the Illumina Infinium HumanMethylation450 BeadArray, and histone acetylation with chromatin immunoprecipitation sequencing. . …
We are in the midst of 2 large studies of human brains including coverage of more than 420,000 autosomal cytosine-guanine dinucleotides with …
Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data.
Smith ML, Dunning MJ, Tavaré S, Lynch AG. Smith ML, et al. BMC Bioinformatics. 2010 Apr 27;11:208. doi: 10.1186/1471-2105-11-208. BMC Bioinformatics. 2010. PMID: 20423502 Free PMC article.
If this step goes wrong, then subsequent preprocessing and processing stages will stand little chance of rectifying the matter. Illumina employ random construction of their BeadArrays, making feature-intensity extraction even more important for the Illumina platform …
If this step goes wrong, then subsequent preprocessing and processing stages will stand little chance of rectifying the matter. Illumina …
Functional noninvasive detection of glycolytic pancreatic ductal adenocarcinoma.
Heid I, Münch C, Karakaya S, Lueong SS, Winkelkotte AM, Liffers ST, Godfrey L, Cheung PFY, Savvatakis K, Topping GJ, Englert F, Kritzner L, Grashei M, Tannapfel A, Viebahn R, Wolters H, Uhl W, Vangala D, Smeets EMM, Aarntzen EHJG, Rauh D, Weichert W, Hoheisel JD, Hahn SA, Schilling F, Braren R, Trajkovic-Arsic M, Siveke JT. Heid I, et al. Cancer Metab. 2022 Dec 9;10(1):24. doi: 10.1186/s40170-022-00298-5. Cancer Metab. 2022. PMID: 36494842 Free PMC article.
METHODS: We used different patient-derived PDAC model systems (conventional and primary patient-derived cells, patient-derived xenografts (PDX), and patient samples) and performed transcriptional and functional metabolic analysis. These included RNAseq and Illumina HT12 …
METHODS: We used different patient-derived PDAC model systems (conventional and primary patient-derived cells, patient-derived xenografts (P …
Statistical methods of background correction for Illumina BeadArray data.
Xie Y, Wang X, Story M. Xie Y, et al. Bioinformatics. 2009 Mar 15;25(6):751-7. doi: 10.1093/bioinformatics/btp040. Epub 2009 Feb 4. Bioinformatics. 2009. PMID: 19193732 Free PMC article.
With BeadArray technology, high data quality is generated from low sample input at reduced cost. However, the analysis methods for Illumina BeadArrays are far behind those for Affymetrix oligonucleotide arrays, and so need to be improved. ...
With BeadArray technology, high data quality is generated from low sample input at reduced cost. However, the analysis methods for …
Model-Based Background Correction (MBCB): R Methods and GUI for Illumina Bead-array Data.
Allen JD, Chen M, Xie Y. Allen JD, et al. J Cancer Sci Ther. 2009;1(1):25-27. doi: 10.4172/1948-5956.1000004. J Cancer Sci Ther. 2009. PMID: 20502629 Free PMC article.
SUMMARY: Illumina BeadArray platform (Illumina Inc.) is playing an increasing role in cancer research. MBCB, an R package designed for use on Illumina Bead-Array data, allows for microarray data to be pre-processed through various model-b …
SUMMARY: Illumina BeadArray platform (Illumina Inc.) is playing an increasing role in cancer research. MBCB, an R packa …
172 results