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    LOC100411069 patr class I histocompatibility antigen, A-126 alpha chain [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100411069, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC100411069
    Gene description
    patr class I histocompatibility antigen, A-126 alpha chain
    See related
    Ensembl:ENSCJAG00000031894 Ensembl:ENSCJAG00000035293
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Also known as
    Caja-B; Caja-B3; Mhc-Caja-B
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    Genomic context

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    See LOC100411069 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (34744338..34905601, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (35383382..35386748, complement)

    Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S27-like Neighboring gene E3 ubiquitin-protein ligase RNF181-like Neighboring gene U6 spliceosomal RNA Neighboring gene HLA class I histocompatibility antigen, alpha chain G-like Neighboring gene E3 ubiquitin-protein ligase RNF181-like Neighboring gene cyclin-G1-like Neighboring gene uncharacterized LOC103792351 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC108591138 Neighboring gene 60S ribosomal protein L13a-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptide antigen binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signaling receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in antigen processing and presentation of endogenous peptide antigen via MHC class Ib IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of T cell mediated cytotoxicity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HLA class I histocompatibility antigen, C alpha chain; class I histocompatibility antigen, Gogo-B*0102 alpha chain; patr class I histocompatibility antigen, A-126 alpha chain; popy Class I histocompatibility antigen, A-1 alpha chain
    Names
    MHC class I antigen
    MHC class I protein
    MHC class IB protein
    major histocompatibility complex class I B3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071445.1 Reference mCalJa1.2.pat.X

      Range
      34744338..34905601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054254934.1 → XP_054110909.1  patr class I histocompatibility antigen, A-126 alpha chain isoform X2

    2. XM_054254937.1 → XP_054110912.1  patr class I histocompatibility antigen, A-126 alpha chain isoform X5

    3. XM_035297568.2 → XP_035153459.2  patr class I histocompatibility antigen, A-126 alpha chain isoform X7

      UniProtKB/TrEMBL
      A0A8I3WJS6

    4. XM_017969397.4 → XP_017824886.3  patr class I histocompatibility antigen, A-126 alpha chain isoform X6

    5. XM_054254940.1 → XP_054110915.1  patr class I histocompatibility antigen, A-126 alpha chain isoform X9

    6. XM_054254936.1 → XP_054110911.1  patr class I histocompatibility antigen, A-126 alpha chain isoform X4

      UniProtKB/TrEMBL
      A0A8I3WBX2

    7. XM_054254939.1 → XP_054110914.1  HLA class I histocompatibility antigen, C alpha chain isoform X8

    8. XM_054254935.1 → XP_054110910.1  patr class I histocompatibility antigen, A-126 alpha chain isoform X3

    9. XM_054254933.1 → XP_054110908.1  class I histocompatibility antigen, Gogo-B*0102 alpha chain isoform X1

      UniProtKB/TrEMBL
      A0A5F4WLF3
    Nucleotide Protein
    Heading Accession and Version

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