U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Syndig1 synapse differentiation inducing 1 [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101720110, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Syndig1
    Gene description
    synapse differentiation inducing 1
    See related
    Ensembl:ENSHGLG00000001156
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Syndig1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624939.1 (560192..698100, complement)

    NW_004624939.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase-associated protein RTF1 homolog Neighboring gene cystatin F Neighboring gene cystatin-C-like Neighboring gene cystatin-C

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_004624939 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of synapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle clustering IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in excitatory synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic density membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    synapse differentiation-inducing gene protein 1
    Names
    synapse differentiation-inducing protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624939.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      560192..698100 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021252165.1 → XP_021107824.1  synapse differentiation-inducing gene protein 1 isoform X1

      UniProtKB/TrEMBL
      G5BJV9
      Conserved Domains (1) summary
      pfam04505
      Location:176 → 272
      CD225; Interferon-induced transmembrane protein

    2. XM_004874782.2 → XP_004874839.1  synapse differentiation-inducing gene protein 1 isoform X2

      See identical proteins and their annotated locations for XP_004874839.1

      UniProtKB/TrEMBL
      A0A0P6K958, G5BJV9
      Related
      ENSHGLP00000001511.1, ENSHGLT00000001555.1
      Conserved Domains (1) summary
      pfam04505
      Location:176 → 241
      CD225; Interferon-induced transmembrane protein

    3. XM_021252163.1 → XP_021107822.1  synapse differentiation-inducing gene protein 1 isoform X1

      UniProtKB/TrEMBL
      G5BJV9
      Conserved Domains (1) summary
      pfam04505
      Location:176 → 272
      CD225; Interferon-induced transmembrane protein

    4. XM_021252164.1 → XP_021107823.1  synapse differentiation-inducing gene protein 1 isoform X1

      UniProtKB/TrEMBL
      G5BJV9
      Conserved Domains (1) summary
      pfam04505
      Location:176 → 272
      CD225; Interferon-induced transmembrane protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.