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    LOC109828085 beta-galactosidase [ Asparagus officinalis (garden asparagus) ]

    Gene ID: 109828085, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC109828085
    Gene description
    beta-galactosidase
    Locus tag
    A4U43_C01F23190
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Asparagus officinalis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Asparagaceae; Asparagoideae; Asparagus
    Also known as
    Lactase
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    Genomic context

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    See LOC109828085 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current Aspof.V1 (GCF_001876935.1) 1 NC_033794.1 (92114123..92119967, complement)

    Chromosome 1 - NC_033794.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109843261 Neighboring gene uncharacterized LOC109828075 Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase 1-like Neighboring gene uncharacterized LOC109828099 Neighboring gene tetraspanin-2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_033794.1 Chromosome 1 Reference Aspof.V1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning of a harvest-induced beta-galactosidase from tips of harvested asparagus spears. King GA, et al. Plant Physiol, 1995 May. PMID 7784512, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-galactosidase
    XP_020250713.1
    XP_020250721.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001426207.1 → NP_001413136.1  beta-galactosidase precursor

      Status: VALIDATED

      Source sequence(s)
      MPDI01003418, X77319
      UniProtKB/Swiss-Prot
      P45582

    RefSeqs of Annotated Genomes: Asparagus officinalis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aspof.V1

    Genomic

    1. NC_033794.1 Reference Aspof.V1

      Range
      92114123..92119967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020395124.1 → XP_020250713.1  beta-galactosidase isoform X1

      Conserved Domains (1) summary
      cl26201
      Location:23 → 831
      GanA; Beta-galactosidase GanA [Carbohydrate transport and metabolism]

    2. XM_020395132.1 → XP_020250721.1  beta-galactosidase isoform X2

      UniProtKB/Swiss-Prot
      P45582
      UniProtKB/TrEMBL
      A0A5P1FU14
      Conserved Domains (1) summary
      cl26201
      Location:23 → 826
      GanA; Beta-galactosidase GanA [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P45582.1 GenPept UniProtKB/Swiss-Prot:P45582

    Gene LinkOut

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    Molecular Biology Databases