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    LOC110435983 transposon Tf2-1 polyprotein [ Sorghum bicolor (sorghum) ]

    Gene ID: 110435983, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC110435983
    Gene description
    transposon Tf2-1 polyprotein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC110435983 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 5 NC_012874.2 (63441137..63446187, complement)

    Chromosome 5 - NC_012874.2Genomic Context describing neighboring genes Neighboring gene F-box protein At5g06550 Neighboring gene 21 kDa protein Neighboring gene uncharacterized LOC110435984 Neighboring gene myosin-binding protein 7-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012874.2 Chromosome 5 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC110435983

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012874.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      63441137..63446187 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021462114.1 → XP_021317789.1  uncharacterized protein LOC110435983

      Conserved Domains (4) summary
      cd00303
      Location:384 → 474
      retropepsin_like; Retropepsins; pepsin-like aspartate proteases
      cd01647
      Location:595 → 771
      RT_LTR; Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of ...
      cd09274
      Location:866 → 980
      RNase_HI_RT_Ty3; Ty3/Gypsy family of RNase HI in long-term repeat retroelements
      cl21549
      Location:1096 → 1167
      rve; Integrase core domain
    Nucleotide Protein
    Heading Accession and Version

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