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    COLEC11 collectin subfamily member 11 [ Empidonax traillii (willow flycatcher) ]

    Gene ID: 114063742, updated on 15-Mar-2024

    Summary

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    Gene symbol
    COLEC11
    Gene description
    collectin subfamily member 11
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Empidonax traillii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Tyrannidae; Empidonax
    Orthologs
    human mouse all
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    Genomic context

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    See COLEC11 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current ASM303162v1 (GCF_003031625.1) Unplaced Scaffold NW_020955681.1 (191584..227985, complement)

    NW_020955681.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S7 Neighboring gene uncharacterized LOC114063748

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020955681 Unplaced Scaffold Reference ASM303162v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collectin-11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Empidonax traillii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM303162v1

    Genomic

    1. NW_020955681.1 Reference ASM303162v1

      Range
      191584..227985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027896237.1 → XP_027752038.1  collectin-11 isoform X1

      Conserved Domains (2) summary
      cd03591
      Location:157 → 272
      CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
      pfam01391
      Location:47 → 98
      Collagen; Collagen triple helix repeat (20 copies)

    2. XM_027896236.1 → XP_027752037.1  collectin-11 isoform X1

      Conserved Domains (2) summary
      cd03591
      Location:157 → 272
      CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
      pfam01391
      Location:47 → 98
      Collagen; Collagen triple helix repeat (20 copies)

    3. XM_027896239.1 → XP_027752040.1  collectin-11 isoform X2

      Conserved Domains (2) summary
      cd03591
      Location:151 → 266
      CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
      pfam01391
      Location:47 → 98
      Collagen; Collagen triple helix repeat (20 copies)

    4. XM_027896238.1 → XP_027752039.1  collectin-11 isoform X1

      Conserved Domains (2) summary
      cd03591
      Location:157 → 272
      CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
      pfam01391
      Location:47 → 98
      Collagen; Collagen triple helix repeat (20 copies)
    Nucleotide Protein
    Heading Accession and Version

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