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    TRIM9 tripartite motif containing 9 [ Myotis myotis ]

    Gene ID: 118655149, updated on 30-Mar-2024

    Summary

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    Gene symbol
    TRIM9
    Gene description
    tripartite motif containing 9
    Locus tag
    mMyoMyo1_019786
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Myotis myotis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM9 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current mMyoMyo1.p (GCF_014108235.1) Unplaced Scaffold NW_023416313.1 (185075370..185166540, complement)

    NW_023416313.1Genomic Context describing neighboring genes Neighboring gene abhydrolase domain containing 12B Neighboring gene glycogen phosphorylase L Neighboring gene U1 spliceosomal RNA Neighboring gene cleavage and polyadenylation specificity factor subunit 7-like Neighboring gene small nucleolar RNA SNORA70 Neighboring gene thioredoxin related transmembrane protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023416313 Unplaced Scaffold Reference mMyoMyo1.p Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Myotis myotis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mMyoMyo1.p Primary Assembly

    Genomic

    1. NW_023416313.1 Reference mMyoMyo1.p Primary Assembly

      Range
      185075370..185166540 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036306662.1 → XP_036162555.1  E3 ubiquitin-protein ligase TRIM9 isoform X4

      Conserved Domains (6) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      cd00063
      Location:449 → 528
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:616 → 781
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:5 → 52
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223 → 271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166 → 212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

    2. XM_036306681.1 → XP_036162574.1  E3 ubiquitin-protein ligase TRIM9 isoform X6

      UniProtKB/TrEMBL
      A0A7J8ASK7
      Conserved Domains (6) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453 → 532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:529 → 700
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:5 → 52
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223 → 271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166 → 212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

    3. XM_036306689.1 → XP_036162582.1  E3 ubiquitin-protein ligase TRIM9 isoform X7

      Conserved Domains (7) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453 → 532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:620 → 767
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd00162
      Location:10 → 49
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cd19826
      Location:223 → 271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166 → 212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cl17238
      Location:5 → 52
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    4. XM_036306643.1 → XP_036162536.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

      Conserved Domains (6) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453 → 532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:620 → 785
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:5 → 52
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223 → 271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166 → 212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

    5. XM_036306672.1 → XP_036162565.1  E3 ubiquitin-protein ligase TRIM9 isoform X5

      UniProtKB/TrEMBL
      A0A7J8AS80
      Conserved Domains (6) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      cd00063
      Location:468 → 547
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:544 → 715
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:5 → 52
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223 → 271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166 → 212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

    6. XM_036306652.1 → XP_036162545.1  E3 ubiquitin-protein ligase TRIM9 isoform X3

      Conserved Domains (7) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      cd00063
      Location:468 → 547
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:635 → 782
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd00162
      Location:10 → 49
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cd19826
      Location:223 → 271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166 → 212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cl17238
      Location:5 → 52
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    7. XM_036306632.1 → XP_036162525.1  E3 ubiquitin-protein ligase TRIM9 isoform X1

      UniProtKB/TrEMBL
      A0A7J8ARV5
      Conserved Domains (6) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      cd00063
      Location:468 → 547
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:635 → 800
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:5 → 52
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223 → 271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166 → 212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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