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    TOM1L1 target of myb1 like 1 membrane trafficking protein [ Ochotona curzoniae (black-lipped pika) ]

    Gene ID: 121169685, updated on 22-Mar-2024

    Summary

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    Gene symbol
    TOM1L1
    Gene description
    target of myb1 like 1 membrane trafficking protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ochotona curzoniae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
    Orthologs
    human mouse all
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    Genomic context

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    See TOM1L1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current NIBS_Ocur_1.0 (GCF_017591425.1) Unplaced Scaffold NW_024467094.1 (24667768..24706785, complement)

    NW_024467094.1Genomic Context describing neighboring genes Neighboring gene HLF transcription factor, PAR bZIP family member Neighboring gene syntaxin binding protein 4 Neighboring gene cytochrome c oxidase assembly protein COX11, mitochondrial Neighboring gene uncharacterized LOC121169728 Neighboring gene kinesin family member 2B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024467094 Unplaced Scaffold Reference NIBS_Ocur_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TOM1-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ochotona curzoniae Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NIBS_Ocur_1.0 Primary Assembly

    Genomic

    1. NW_024467094.1 Reference NIBS_Ocur_1.0 Primary Assembly

      Range
      24667768..24706785 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041000292.1 → XP_040856226.1  TOM1-like protein 1 isoform X1

      Conserved Domains (3) summary
      pfam05467
      Location:304 → 463
      Herpes_U47; Herpesvirus glycoprotein U47
      cd16997
      Location:14 → 150
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cl03906
      Location:199 → 288
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    2. XM_041000290.1 → XP_040856224.1  TOM1-like protein 1 isoform X1

      Conserved Domains (3) summary
      pfam05467
      Location:304 → 463
      Herpes_U47; Herpesvirus glycoprotein U47
      cd16997
      Location:14 → 150
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cl03906
      Location:199 → 288
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    3. XM_041000293.1 → XP_040856227.1  TOM1-like protein 1 isoform X2

      Conserved Domains (3) summary
      pfam05467
      Location:262 → 421
      Herpes_U47; Herpesvirus glycoprotein U47
      cl02544
      Location:14 → 125
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
      cl03906
      Location:157 → 246
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    4. XM_041000294.1 → XP_040856228.1  TOM1-like protein 1 isoform X3

      Conserved Domains (3) summary
      pfam05467
      Location:227 → 386
      Herpes_U47; Herpesvirus glycoprotein U47
      cl02544
      Location:1 → 73
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
      cl03906
      Location:122 → 211
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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