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    CG13004 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32673, updated on 10-May-2024

    Summary

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    Official Symbol
    CG13004provided by FlyBase
    Primary source
    FLYBASE:FBgn0030797
    Locus tag
    Dmel_CG13004
    See related
    AllianceGenome:FB:FBgn0030797
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13004
    Summary
    Is expressed in adult midgut progenitor cell; embryonic hindgut; embryonic/larval posterior spiracle; organism; and pole plasm. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG13004 in Genome Data Viewer
    Location:
    15A11-15A11; 1-55 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (16826681..16835520, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (16720714..16729553, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR44053 Neighboring gene pickpocket 28 Neighboring gene long non-coding RNA:CR44129 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Regulator of G-protein signaling 7 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular evolution and population genetic analysis of candidate female reproductive genes in Drosophila. Panhuis TM, et al. Genetics, 2006 Aug. PMID 16783023, Free PMC Article
    2. Genetic architecture of natural variation in visual senescence in Drosophila. Carbone MA, et al. Proc Natl Acad Sci U S A, 2016 Oct 25. PMID 27791033, Free PMC Article
    3. Extensive identification and analysis of conserved small ORFs in animals. Mackowiak SD, et al. Genome Biol, 2015 Sep 14. PMID 26364619, Free PMC Article
    4. Expression-Based Cell Lineage Analysis in Drosophila Through a Course-Based Research Experience for Early Undergraduates. Olson JM, et al. G3 (Bethesda), 2019 Nov 5. PMID 31690598, Free PMC Article
    5. The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster. Jehrke L, et al. Sci Rep, 2018 Apr 18. PMID 29670218, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13004-PA
    CG13004-PB
    CG13004-PC
    CG13004-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      16826681..16835520 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001103536.3 → NP_001097006.1  uncharacterized protein Dmel_CG13004, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097006.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0GSW5, Q9VXA4

    2. NM_001258792.2 → NP_001245721.1  uncharacterized protein Dmel_CG13004, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245721.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9NGJ4, Q0GSW5

    3. NM_132943.3 → NP_573171.1  uncharacterized protein Dmel_CG13004, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_573171.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0GSW5, Q9VXA4
      Related
      FBpp0074125

    4. NM_001201724.1 → NP_001188653.1  uncharacterized protein Dmel_CG13004, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188653.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0GSW5, Q9VXA4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9NGJ4 M9NGJ4
    Q9VXA4 Q9VXA4

    Gene LinkOut

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