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    CAALFM_C305800WA tRNA splicing endonuclease subunit [ Candida albicans SC5314 ]

    Gene ID: 3641754, updated on 30-Nov-2023

    Summary

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    Gene symbol
    CAALFM_C305800WA
    Gene description
    tRNA splicing endonuclease subunit
    Locus tag
    CAALFM_C305800WA
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Candida albicans SC5314 (strain: SC5314, nat-host: Homo sapiens, culture-collection: ATCC:MYA-2876)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida
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    Genomic context

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    See CAALFM_C305800WA in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_032091.1 (1298785..1300203)

    Chromosome 3 - NC_032091.1Genomic Context describing neighboring genes Neighboring gene DNA-binding transcription factor Neighboring gene SAGA histone acetyltransferase complex subunit Neighboring gene Skn1p Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_032091.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure. Muzzey D, et al. Genome Biol, 2013. PMID 24025428, Free PMC Article
    2. Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes. van het Hoog M, et al. Genome Biol, 2007. PMID 17419877, Free PMC Article
    3. The diploid genome sequence of Candida albicans. Jones T, et al. Proc Natl Acad Sci U S A, 2004 May 11. PMID 15123810, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in tRNA-type intron splice site recognition and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of tRNA-intron endonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA splicing endonuclease subunit
    XP_716602.1
    • Ortholog(s) have tRNA-intron endonuclease activity, role in tRNA-type intron splice site recognition and cleavage and mitochondrial outer membrane, tRNA-intron endonuclease complex localization

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_032091.1 Reference assembly

      Range
      1298785..1300203
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_711509.1 → XP_716602.1  tRNA splicing endonuclease subunit [Candida albicans SC5314]

      See identical proteins and their annotated locations for XP_716602.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1D8PKA3, C4YNV7
      Conserved Domains (1) summary
      pfam12928
      Location:87 → 160
      tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    Nucleotide Protein
    Heading Accession and Version

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