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    PUM2 pumilio RNA binding family member 2 [ Gallus gallus (chicken) ]

    Gene ID: 421961, updated on 3-Apr-2024

    Summary

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    Symbol
    PUM2provided by CGNC
    Full Name
    pumilio RNA binding family member 2provided by CGNC
    Primary source
    CGNC:12341
    See related
    Ensembl:ENSGALG00010008032
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PUM2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (101339520..101402735, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (101170364..101233529, complement)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110268 Neighboring gene syndecan 1 Neighboring gene B(0,+)-type amino acid transporter 1-like Neighboring gene rho-related GTP-binding protein RhoB-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and gene expression profiling of the Pum1 and Pum2 members of the Pumilio family in the chicken. Lee JY, et al. Mol Reprod Dev, 2008 Jan. PMID 17474090

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pumilio homolog 2
    Names
    pumilio 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039292.2 → NP_001034381.2  pumilio homolog 2 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000067
      UniProtKB/TrEMBL
      F1NV23
      Related
      ENSGALP00010010720.1, ENSGALT00010019171.1
      Conserved Domains (1) summary
      cd07920
      Location:718 → 1039
      Pumilio; Pumilio-family RNA binding domain

    2. NM_001396832.1 → NP_001383761.1  pumilio homolog 2 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000067
      UniProtKB/TrEMBL
      A0A8V0XR72
      Conserved Domains (1) summary
      cd07920
      Location:719 → 1042
      Pumilio; Pumilio-family RNA binding domain

    3. NM_001396833.1 → NP_001383762.1  pumilio homolog 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000067
      UniProtKB/TrEMBL
      A0A8V0Y047
      Conserved Domains (1) summary
      cd07920
      Location:719 → 1040
      Pumilio; Pumilio-family RNA binding domain

    4. NM_001396834.2 → NP_001383763.1  pumilio homolog 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000067
      UniProtKB/TrEMBL
      A0A8V0Y047
      Related
      ENSGALP00010010716.1, ENSGALT00010019167.1
      Conserved Domains (1) summary
      cd07920
      Location:719 → 1040
      Pumilio; Pumilio-family RNA binding domain

    5. NM_001396835.2 → NP_001383764.1  pumilio homolog 2 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000067
      UniProtKB/TrEMBL
      F1NV23
      Related
      ENSGALP00010010711.1, ENSGALT00010019162.1
      Conserved Domains (1) summary
      cd07920
      Location:718 → 1039
      Pumilio; Pumilio-family RNA binding domain

    6. NM_001396836.2 → NP_001383765.1  pumilio homolog 2 isoform d

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000067
      UniProtKB/TrEMBL
      A0A8V0Y3M7
      Conserved Domains (1) summary
      cd07920
      Location:640 → 963
      Pumilio; Pumilio-family RNA binding domain

    7. NM_001396837.1 → NP_001383766.1  pumilio homolog 2 isoform d

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000067
      UniProtKB/TrEMBL
      A0A8V0Y3M7
      Related
      ENSGALP00010010714.1, ENSGALT00010019165.1
      Conserved Domains (1) summary
      cd07920
      Location:640 → 963
      Pumilio; Pumilio-family RNA binding domain

    8. NM_001396838.1 → NP_001383767.1  pumilio homolog 2 isoform e

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000067
      Conserved Domains (1) summary
      cd07920
      Location:640 → 961
      Pumilio; Pumilio-family RNA binding domain

    9. NM_001396839.1 → NP_001383768.1  pumilio homolog 2 isoform e

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000067
      Conserved Domains (1) summary
      cd07920
      Location:640 → 961
      Pumilio; Pumilio-family RNA binding domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      101339520..101402735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040697215.2 → XP_040553149.1  pumilio homolog 2 isoform X4

      UniProtKB/TrEMBL
      Q2VB18
      Conserved Domains (1) summary
      cd07920
      Location:639 → 960
      Pumilio; Pumilio-family RNA binding domain

    2. XM_015284963.4 → XP_015140449.1  pumilio homolog 2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N8
      Conserved Domains (1) summary
      cd07920
      Location:718 → 1041
      Pumilio; Pumilio-family RNA binding domain

    3. XM_015284961.4 → XP_015140447.1  pumilio homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XR72, A0A8V0Y3N8
      Related
      ENSGALP00010010713.1, ENSGALT00010019164.1
      Conserved Domains (1) summary
      cd07920
      Location:719 → 1042
      Pumilio; Pumilio-family RNA binding domain

    4. XM_046938950.1 → XP_046794906.1  pumilio homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XR72

    5. XM_046938949.1 → XP_046794905.1  pumilio homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XR72

    6. XM_040697210.2 → XP_040553144.1  pumilio homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XR72, A0A8V0Y3N8
      Conserved Domains (1) summary
      cd07920
      Location:719 → 1042
      Pumilio; Pumilio-family RNA binding domain

    7. XM_040697216.2 → XP_040553150.1  pumilio homolog 2 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y3M7, A0A8V0Y3N8
      Conserved Domains (1) summary
      cd07920
      Location:640 → 963
      Pumilio; Pumilio-family RNA binding domain

    8. XM_015284960.4 → XP_015140446.1  pumilio homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XR72, A0A8V0Y3N8
      Conserved Domains (1) summary
      cd07920
      Location:719 → 1042
      Pumilio; Pumilio-family RNA binding domain

    9. XM_040697211.2 → XP_040553145.1  pumilio homolog 2 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y047, Q2VB18
      Conserved Domains (1) summary
      cd07920
      Location:719 → 1040
      Pumilio; Pumilio-family RNA binding domain

    10. XM_015284970.4 → XP_015140456.1  pumilio homolog 2 isoform X7

      UniProtKB/TrEMBL
      A0A8V0Y3N8
      Conserved Domains (1) summary
      cd07920
      Location:719 → 914
      Pumilio; Pumilio-family RNA binding domain

    11. XM_015284969.4 → XP_015140455.1  pumilio homolog 2 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y3N8
      Conserved Domains (1) summary
      cd07920
      Location:719 → 916
      Pumilio; Pumilio-family RNA binding domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      101170364..101233529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046914207.1 → XP_046770163.1  pumilio homolog 2 isoform X4

    2. XM_046914205.1 → XP_046770161.1  pumilio homolog 2 isoform X2

    3. XM_046914201.1 → XP_046770157.1  pumilio homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XR72

    4. XM_046914204.1 → XP_046770160.1  pumilio homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XR72

    5. XM_046914203.1 → XP_046770159.1  pumilio homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XR72

    6. XM_046914208.1 → XP_046770164.1  pumilio homolog 2 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y3M7

    7. XM_046914202.1 → XP_046770158.1  pumilio homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XR72

    8. XM_046914206.1 → XP_046770162.1  pumilio homolog 2 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y047

    9. XM_046914210.1 → XP_046770166.1  pumilio homolog 2 isoform X7

    10. XM_046914209.1 → XP_046770165.1  pumilio homolog 2 isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version

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