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    LOC4344615 cysteine-rich repeat secretory protein 55 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344615, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4344615
    Gene description
    cysteine-rich repeat secretory protein 55
    Locus tag
    OSNPB_080136300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    m33; OJ1613_G04.10
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC4344615 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (2054218..2056020, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene tryptophan synthase beta chain 1 Neighboring gene homeobox-leucine zipper protein ROC7-like Neighboring gene cysteine-rich repeat secretory protein 55 Neighboring gene cysteine-rich repeat secretory protein 55

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cysteine-rich repeat secretory protein 55
    Names
    33-kDa secretory protein
    Os08g0136300
    P0680F05.49

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      2054218..2056020 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794394.2 → XP_015649880.1  cysteine-rich repeat secretory protein 55

      UniProtKB/TrEMBL
      A0A0P0XBH0, A0A7D0ICK2, A2YR04, Q0J853, Q6ZJX8, Q8H768
      Conserved Domains (1) summary
      pfam01657
      Location:55 → 134
      Stress-antifung; Salt stress response/antifungal
    Nucleotide Protein
    Heading Accession and Version

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