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    PODXL podocalyxin like [ Bos taurus (cattle) ]

    Gene ID: 616366, updated on 5-Mar-2024

    Summary

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    Official Symbol
    PODXLprovided by VGNC
    Official Full Name
    podocalyxin likeprovided by VGNC
    Primary source
    VGNC:VGNC:53665
    See related
    BGD:BT19395; Ensembl:ENSBTAG00000010452
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PODXL in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (95244821..95294274, complement)

    Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene muskelin 1 Neighboring gene transcription factor BTF3-like Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene uncharacterized LOC132345130 Neighboring gene kidney mitochondrial carrier protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell-cell adhesion mediated by integrin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of microvillus assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microvillus membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    podocalyxin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      95244821..95294274 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002686960.6 → XP_002687006.4  podocalyxin isoform X1

      UniProtKB/TrEMBL
      F1MLI8
      Related
      ENSBTAP00000013799.6, ENSBTAT00000013799.6
      Conserved Domains (2) summary
      pfam06365
      Location:311 → 508
      CD34_antigen; CD34/Podocalyxin family
      cl25496
      Location:21 → 268
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    2. XM_059886059.1 → XP_059742042.1  podocalyxin isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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