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    LOC7481599 glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7481599, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7481599
    Gene description
    glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic
    Locus tag
    POPTR_010G172400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7481599 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 10 NC_037294.2 (17346220..17352239)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 10 NC_037294.1 (17334786..17341064)

    Chromosome 10 - NC_037294.2Genomic Context describing neighboring genes Neighboring gene protein CHROMATIN REMODELING 4 Neighboring gene uncharacterized LOC7492958 Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 Neighboring gene metal tolerance protein 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037294.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      17346220..17352239
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002315035.4 → XP_002315071.2  glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic

      See identical proteins and their annotated locations for XP_002315071.2

      UniProtKB/TrEMBL
      A9PHA3, B9HY35
      Conserved Domains (1) summary
      PLN02272
      Location:1 → 422
      PLN02272; glyceraldehyde-3-phosphate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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